Table 1.

Transcriptomics tools and deposited data.

Software and algorithms utilized
Fastqc (v0.11.5)	(http://www.bioinformatics.babraham.ac.uk/projects/fastqc/)	http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
STAR (v2.5.2a)	46	https://github.com/alexdobin/STAR
Samtools (v1.1)	47	https://sourceforge.net/projects/samtools/
DESeq2 (v1.30.0)	48	https://bioconductor.org/packages/release/bioc/html/DESeq2.html
Bioinformatics & Evolutionary Genomics	http://bioinformatics.psb.ugent.be/webtools/Venn/	http://bioinformatics.psb.ugent.be/webtools/Venn/
Cytoscape/ClueGO (v3.7.1)	50	http://apps.cytoscape.org/apps/cluego
David (v6.8)	51	https://david.ncifcrf.gov/
Enrichr	52	http://amp.pharm.mssm.edu/Enrichr/
REVIGO	53	http://revigo.irb.hr/
Genesis (v1.8.1)	54	http://genome.tugraz.at
Shinyheatmap	57	http://shinyheatmap.com/
Deposited Data
Mouse reference genome, GRCm38	Genome Reference Consortium	https://www.ncbi.nlm.nih.gov/grc/mouse
Gencode GRCm38 primary assembly M20 and the associated GTF annotation file	Gencode	https://www.gencodegenes.org/mouse/release_M20.html
Raw data	56	https://www.ncbi.nlm.nih.gov/bioproject/PRJNA778593
Commercial kits
TruSeq® Stranded mRNA Library Prep	Illumina Italy S.r.l.	20020594
RNA ScreenTape	Agilent Technologies Italia S.p.A.	5067-5576