Biological samples |
Canine glioma biopsies |
Oncovet Clinic |
oncovet-clinical-research.com
|
Chemicals, peptides, and recombinant proteins |
Optima LC/MS grade acetonitrile |
Fisher |
Cat# A955-4 |
Optima LC/MS grade methanol |
Fisher |
CAS 67-56-1 |
Xylene |
Fisher |
CAS 1330-20-7 |
Trifluoroacetic acid |
Biosolve |
CAS 76-05-1 |
Ammonium bicarbonate |
Sigma |
CAS 1066-33-7 |
2,5 dihydroxybenzoic acid (DHB) |
Sigma |
CAS 490-79-9 |
Dako Mounting Medium |
Agilent |
Cat# CS70330-2 |
4′,6-diamidino-2-phenylindole (DAPI) |
Sigma |
CAS 28718-90-3 |
poly-D-lysine hydrobromide |
Sigma |
CAS 27964-99-4 |
bovine serum albumin (BSA) |
Sigma |
CAS 9048-46-8 |
Biotech grade Tris buffer |
Interchim |
P/N UP158387 |
Formaldehyde |
Sigma |
CAS 50-00-0 |
HCl ampules, sequencing grade |
ThermoFisher |
Cat# 24308 |
Formic acid ampules |
ThermoFisher |
Cat# A11710X1-AMP |
Fluoresceine-tagged Sambuccus nigra agglutinin (SNA) |
Laboratory of Prof. Anne Harduin-Lepers (U Lille); Vector laboratories |
Cat # FL-1301-2 |
Sequence grade modified trypsin |
Promega |
V5111 |
Glycerol free PNGaseF |
New England Biolabs |
P0705S |
Ethanol, 200 proof |
Fisher |
CAS 64-17-5 |
Pierce Ultrapure Water |
ThermoFisher |
Cat# 51140 |
Deposited data |
Glycoproteomic.raw files |
This Study |
PRIDE: PXD025537 |
Byonic glycoproteomic search results |
This Study |
PRIDE: PXD025537 |
Annotated glycoproteomic results |
This Study |
PRIDE: PXD025537 |
MALDI-MSI.raw files |
This Study |
PRIDE: PXD025826 |
Software and algorithms |
Xcalibur software |
ThermoFisher |
|
Byonic |
ProteinMetrics |
https://proteinmetrics.com/
|
GlycoMod |
ExPasy |
web.expasy.org/glycomod/
|
SCiLS MALDI-MSI software |
Bruker |
https://scils.de/
|
Other – Instrumentation |
Rapiflex MALDI-MSI |
Bruker |
n/a |
MALDI-LTQ-Orbitrap |
Thermo |
n/a |
Orbitrap Fusion Tribrid |
Thermo |
n/a |
Dionex Ultimate 3000 HPLC |
Thermo |
n/a |
Fluorescence microscope |
Leica Biosystems |
n/a |
Centrivap vacuum concentrator |
Labconco |
n/a |
Chemical inkjet printer (CHIP 1000) |
Shimadzu |
n/a |