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. Author manuscript; available in PMC: 2023 Jan 20.
Published in final edited form as: Cell Chem Biol. 2021 Jun 7;29(1):30–42.e4. doi: 10.1016/j.chembiol.2021.05.007

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Biological samples
Canine glioma biopsies Oncovet Clinic oncovet-clinical-research.com
Chemicals, peptides, and recombinant proteins
Optima LC/MS grade acetonitrile Fisher Cat# A955-4
Optima LC/MS grade methanol Fisher CAS 67-56-1
Xylene Fisher CAS 1330-20-7
Trifluoroacetic acid Biosolve CAS 76-05-1
Ammonium bicarbonate Sigma CAS 1066-33-7
2,5 dihydroxybenzoic acid (DHB) Sigma CAS 490-79-9
Dako Mounting Medium Agilent Cat# CS70330-2
4′,6-diamidino-2-phenylindole (DAPI) Sigma CAS 28718-90-3
poly-D-lysine hydrobromide Sigma CAS 27964-99-4
bovine serum albumin (BSA) Sigma CAS 9048-46-8
Biotech grade Tris buffer Interchim P/N UP158387
Formaldehyde Sigma CAS 50-00-0
HCl ampules, sequencing grade ThermoFisher Cat# 24308
Formic acid ampules ThermoFisher Cat# A11710X1-AMP
Fluoresceine-tagged Sambuccus nigra agglutinin (SNA) Laboratory of Prof. Anne Harduin-Lepers (U Lille); Vector laboratories Cat # FL-1301-2
Sequence grade modified trypsin Promega V5111
Glycerol free PNGaseF New England Biolabs P0705S
Ethanol, 200 proof Fisher CAS 64-17-5
Pierce Ultrapure Water ThermoFisher Cat# 51140
Deposited data
Glycoproteomic.raw files This Study PRIDE: PXD025537
Byonic glycoproteomic search results This Study PRIDE: PXD025537
Annotated glycoproteomic results This Study PRIDE: PXD025537
MALDI-MSI.raw files This Study PRIDE: PXD025826
Software and algorithms
Xcalibur software ThermoFisher
Byonic ProteinMetrics https://proteinmetrics.com/
GlycoMod ExPasy web.expasy.org/glycomod/
SCiLS MALDI-MSI software Bruker https://scils.de/
Other – Instrumentation
Rapiflex MALDI-MSI Bruker n/a
MALDI-LTQ-Orbitrap Thermo n/a
Orbitrap Fusion Tribrid Thermo n/a
Dionex Ultimate 3000 HPLC Thermo n/a
Fluorescence microscope Leica Biosystems n/a
Centrivap vacuum concentrator Labconco n/a
Chemical inkjet printer (CHIP 1000) Shimadzu n/a