| bp | Base pairs; |
| 3D | Three Dimensional; |
| NGS | Next Generation Sequencing; |
| TAD | Topologically Associating Domain; |
| 3D-GRP | Three Dimensional Genome Reconstruction Problem; |
| MDS | Multidimensional Scaling; |
| LAD | Lamina-Associated Domain; |
| dSCC | Distance Spearman Correlation Coefficient; |
| SA | Simulated Annealing; |
| PSO | Particle Swarm Optimization. |
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