Table 3.
Summary of HPgV analysis. Estimates were obtained using accession U44402 as the reference sequence. * This pool consists of two different HPgV isolates, and individual estimates cannot be independently provided.
Sample/Pool | # Reads | Average Depth Coverage | Genome Coverage | Polyprotein Coverage |
---|---|---|---|---|
SP1 | 25,965 | 1010.7 | 98.4 | 98.6 |
SP3 | 3669 | 130.1 | 94.2 | 95.6 |
SP4 | 4250 | 157.7 | 92.5 | 93.8 |
SP11 | 5706 | 204.0 | 99.2 | 100.0 |
SP13 | 1173 | 40.7 | 96.4 | 97.4 |
SP16 | 9 | 2.4 | 5.5 | 6.0 |
SP19 | 339 | 12.4 | 82.7 | 89.9 |
SP20 | 373 | 13.5 | 70.2 | 76.4 |
SP29 | 6606 | 228.7 | 98.2 | 99.2 |
SP30 | 6924 | 230.1 | 89.7 | 91.1 |
SP33 | 2033 | 71.1 | 92.6 | 94.8 |
SP38 | 2261 | 82.7 | 99.6 | 100.0 |
SP44 | 10,713 | 392.0 | 99.1 | 100.0 |
SP49 | 5226 | 165.7 | 83.4 | 84.0 |
SP53 * | 5344 | 181.2 | 97.5 | 99.8 |
SP56 | 3523 | 121.1 | 91.7 | 93.3 |
SP58 | 2158 | 73.2 | 93.6 | 94.7 |