TABLE 3.
Results of examination of blood cultures with positive growth indices by Gram stain, FISH, and culturea
| Gram stain examination results
|
FISH results
|
Culture results
|
|||
|---|---|---|---|---|---|
| Morphology | n | Oligonucleotide | n | Genus or species | n |
| Gram-positive cocci (clusters) | 62 | Eubacteria | 62 | Eubacteria | 62 |
| Controlb | 0 | ||||
| Staphylococcus spp. | 62 | Staphylococcus spp. | 62 | ||
| Non-S. aureus | 41 | Coagulase-negative Staphylococcic | 41 | ||
| S. aureus | 21 | S. aureus | 21 | ||
| Gram-positive cocci (chains and pairs) | 20 | Eubacteria | 20 | Eubacteria | 20 |
| Control | 0 | ||||
| Streptococcus spp. | 19 | Streptococcus spp. | 19 | ||
| S. pyogenes | 0 | S. pyogenes | 0 | ||
| S. agalactiae | 0 | S. agalactiae | 0 | ||
| Enterococcus spp. | 8 | Enterococcus spp. | 8 | ||
| S. pneumoniae | 7 | S. pneumoniae | 7 | ||
| Viridans group streptococcid | 4 | ||||
| Not identified | 1 | L. lactis | 1 | ||
| Gram-negative rods | 30 | Eubacteria | 30 | Eubacteria | 30 |
| Control | 0 | ||||
| Enterobacteriacea | 23 | Enterobacteriaceae | 23e | ||
| K. pneumoniae | 2 | K. pneumoniae | 2 | ||
| P. aeruginosa | 3 | P. aeruginosa | 3 | ||
| S. maltophilia | 0 | S. maltophilia | 0 | ||
| Not identified | 2 | M. osloensis | 1 | ||
| B. fragilis | 1 | ||||
| Yeasts | 2 | All yeasts | 2 | Yeasts | 2 |
| Control | 0 | ||||
| C. albicans | 2 | C. albicans | 2 | ||
| C. glabrata | 0 | C. glabrata | 0 | ||
| C. parapsilosis | 0 | C. parapsilosis | 0 | ||
| C. krusei | 0 | C. krusei | 0 | ||
| Others | 1 | Eubacteria | 1 | Propionibacterium spp. | 1 |
| Control | 0 | ||||
A total of 115 blood culture specimens were analyzed by FISH. Culture was performed on agar plates, and microorganisms were identified by standard laboratory methods (see Materials and Methods).
A nonsense control oligonucleotide was used (see Materials and Methods).
Coagulase-negative staphylocci included S. epidermidis, S. sciuri, S. haemolyticus, S. schleiferi, and S. cohnii.
Viridans group streptococci were identified by binding of the Streptococcus genus probe detecting all streptococci and simultaneous exclusion of S. pyogenes, S. agalactiae, Enterococcus spp., and S. pneumoniae.
Including E. coli, K. pneumoniae, K. oxytoca, C. freundii, E. aerogenes, and E. cloacae.