Table 2.
List of plant viruses detected using nanopore sequencing technology.
| Virus Name | Host Plant | Nucleic Acid Extraction | Library Preparation Kit | References |
|---|---|---|---|---|
| Sowthistle yellow vein virus (SYVV) | Sonchus oleraceus L. | Total RNA | Direct RNA Sequencing | [37] |
| Cowpea bright yellow mosaic virus (CoBYMV) | Vigna unguiculata | Total DNA | Ligation Sequencing | [38] |
| Plum pox virus | Prunus persica | Total RNA | Ligation Sequencing | [39] |
|
Wheat streak mosaic virus (WSMV) Triticum mosaic virus (TriMV) Barley yellow dwarf virus (BYDV) |
Wheat | Total RNA | Ligation Sequencing | [40] |
|
Tomato yellow leaf curl virus (TYLCV) Watermelon chlorotic stunt virus (WmCSV) Tomato brown rugose fruit virus (ToBRFV) Cucumber green mottle mosaic virus (CGMMV) Zucchini yellow mosaic virus (ZYMV) |
Solanum lycopersicum
Cucumis sativus Citrullus lanatus Cucurbita moschata |
Total RNA Total DNA |
Direct RNA Sequencing Ligation Sequencing |
[41] |
|
Dioscorea bacilliform viruses (DBVs) Yam mild mosaic virus (YMMV) Yam chlorotic necrosis virus (YCNV) |
Dioscorea alata | Total RNA | PCR-cDNA Sequencing Kit | [42] |
|
Potato virus Y (PVY) Potato virus X (PVX) Potato virus S (PVS) Potato leafroll virus (PLRV) |
Solanum tuberosum L. | Total RNA | Ligation Sequencing Kit | [43] |
|
East African cassava mosaic virus (EACMV) African cassava mosaic virus (ACMV) Tobacco leaf curl virus (TLCV) |
Manihot esculenta | Total DNA | Rapid Barcoding Kit |
[36] |