Table 2.

Summary of pairwise group comparisons for four alpha diversity indexes. Benjamini and Hochberg corrected p-values (q-values) for Kruskal–Wallis tests are shown; “ns”: q-value > 0.05.

Comparison	Normal Pouch	Healthy Colon		Healthy Ileum		Healthy Ileum
	vs.	vs.		vs.		vs.
Measure	Pouchitis	Normal Pouch	Pouchitis	Normal Pouch	Pouchitis	Healthy Colon
Shannon’s Entropy	0.009	0.0004	0.004	0.005	ns	ns
Pielou’s evenness	0.013	0.003	0.035	0.001	0.011	ns
Number of Observed Features	ns	0.0005	0.049	ns	ns	0.013
Faith’s Phylogenetic Distance	ns	0.064	ns	0.022	0.022	0.008