Table 1.
Overview of Available Data and Assay Details.
| Project Accession | Assay | Samples | Tissues | Instrument | Library Layout | Number of Experiments |
|---|---|---|---|---|---|---|
| PRJEB26698 | WGS | Two females | 1 | HiSeq 2500 (San Diego, CA, USA) |
2 × 250 bp | 2 |
| PRJEB42407 | WGS | Two males | 1 | NovaSeq 6000 (San Diego, CA, USA) |
2 × 150 bp | 2 |
| PRJEB26787 | RNA-seq | Two females | 30 | HiSeq 2500 (San Diego, CA, USA) |
2 × 250 bp | 60 |
| PRJEB32645 | RRBS | Two females | 10 | HiScanSQ (San Diego, CA, USA) |
1 × 50 bp | 20 |
| PRJEB35307 | Histone ChIP-seq | Two females | 8 | HiSeq 4000 (San Diego, CA, USA) |
1 × 50 bp | 80 |
| PRJEB42315 | Histone ChIP-seq | Two females | 4 | HiSeq 4000 (San Diego, CA, USA) |
1 × 50 bp | 38 |
| PRJEB41079 | CTCF ChIP-seq | Two females | 8 | HiSeq 4000 (San Diego, CA, USA) |
1 × 50 bp | 28 |
| PRJEB41317 | ATAC-seq pilot | Two females | 2 | HiSeq 4000/NextSeq 500 (San Diego, CA, USA) |
2 × 75 bp/2 × 42 bp | 16 |
WGS: whole-genome sequencing; RNA-seq: mRNA sequencing; RRBS: reduced-representation bisulfite sequencing; Histone ChIP-seq: chromatin immunoprecipitation using sequencing for the four major histone marks; CTCF ChIP-seq: chromatin immunoprecipitation using sequencing for CTCF protein; ATAC-seq pilot: assay for transposase accessibility using sequencing.