Table 1.
Gene set names | NOM p-val | FDR q-val |
---|---|---|
KEGG gene set | ||
KEGG_CELL_CYCLE | 1.61E−08 | 0.000000465 |
KEGG_P53_SIGNALING_PATHWAY | 0.000027 | 0.000348425 |
KEGG_DNA_REPLICATION | 0.0001745 | 0.001727684 |
KEGG_MAPK_SIGNALING_PATHWAY | 0.0035289 | 0.020070548 |
HALLMARK gene set | ||
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION | 1E−10 | 4.05E−09 |
HALLMARK_G2M_CHECKPOINT | 1E−10 | 4.05E−09 |
HALLMARK_INTERFERON_GAMMA_RESPONSE | 1E−10 | 4.05E−09 |
HALLMARK_IL6_JAK_STAT3_SIGNALING | 0.0000015 | 0.000028 |
HALLMARK_KRAS_SIGNALING_UP | 0.0031269 | 0.018333216 |
HALLMARK_IL2_STAT5_SIGNALING | 0.0063964 | 0.031755704 |
Gene sets with NOM p-val and FDR q-value < 0.05 are considered as significant