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. 2021 Nov 27;22:569. doi: 10.1186/s12859-021-04453-5

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© The Author(s) 2021, corrected publication 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Scaffolds consistency plots of Ats scaffolds. a Pin_hic scaffolds, b SALSA2 scaffolds and c 3D-DNA scaffolds. The largest 21, 27 and 4 scaffolds from pin_hic, SALSA2 and 3D-DNA scaffolds, consisting of 90% (NG90) of the genome, are aligned to the VGP fAnaTes1.2 assembly. The chromosomes are displayed incrementally from 1 to 23 on the left side and the scaffolds are located on the right side of the ring. Connections show aligned regions over 10 kb. Large-scale mis-assemblies are visible as interrupting ribbons. Pin_hic scaffoldings are neat, no clear misjoins are found, while SALSA2 scaffolds contain about 5 relocations, and 3D-DNA scaffolds contain numerous misjoins