Table 2.
Essential KEGG pathways in X. hortorum pv. vitians LM16734 (non-exhaustive)
|
KEGG pathways |
Essential+Critical genes* |
Total genes† |
|---|---|---|
|
Aminoacyl-tRNA biosynthesis |
22+1 |
24 |
|
Ribosome |
48 |
54 |
|
Protein export |
10+1 |
16 |
|
DNA replication |
10 |
15 |
|
Lipopolysaccharide biosynthesis |
11 |
17 |
|
Peptidoglycan biosynthesis |
12 |
21 |
|
Citrate cycle |
13 |
24 |
|
Oxidative phosphorylation |
26 |
51 |
|
RNA degradation |
7 |
15 |
|
Fatty acid biosynthesis |
6+1 |
19 |
|
Pyrimidine metabolism |
6+2 |
25 |
|
Amino sugar and nucleotide sugar metabolism |
6 |
34 |
|
Purine metabolism |
8 |
55 |
|
Biosynthesis of amino acids |
9+3 |
105 |
*Number of genes identified as essential and growth-defect.
†Total number of genes in the model pathway in the X. campestris pv. campestris ATCC 33913T organism-specific KEGG database.