Antibodies |
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Mouse monoclonal anti-Kirrel3; clone N321C/49 |
Neuromab |
Catalog no. 75–333; RRID: AB_2315857 |
Rabbit polyclonal anti-VGLUT2 |
Synaptic Systems |
Catalog no. 135402; RRID: AB_2187539 |
Anti-FLAG M2 antibody |
Sigma |
Catalog no. F3165; RRID: AB_259529 |
THE™ His tag antibody [iFluor 488] |
GenScript |
Catalog no. A01800 |
Secondary donkey anti-mouse Alexa Fluor 488 |
Thermo Fisher |
Catalog no. A-21202; RRID: AB_141607 |
Rat anti-HSC70/HSP73 |
Enzo Life Sciences |
Catalog no. ADI-SPA-815-D; RRID: AB_2039279 |
Rabbit anti-β-actin |
Cell Signaling Technology |
Catalog no. 8457P; RRID: AB_10950489 |
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Chemicals, peptides, and recombinant proteins |
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Anti-DYKDDDDK G1 affinity resin |
GenScript |
Catalog no. L00432 |
Rhodamine-Griffonia (Bandeiraea) Simplicifolia Lectin I |
Vector Laboratories |
Catalog no. RL-1102–2 |
EZ-link Sulfo-NHS-SS-Biotin |
Thermo Fisher |
Catalog no. 21331 |
Hoechst 33342 |
Thermo Fisher |
Catalog no. H3570 |
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Critical commercial assays |
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Super Signal Western Femto Kit |
Thermo Fisher |
Catalog no. 34094 |
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Deposited data |
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Crystal structure and structure factors for mKirrel2 D1 |
This paper |
PDB: 7LTW |
Crystal structure and structure factors for mKirrel3 D1 |
This paper |
PDB: 7LU6 |
Small-angle X-ray scattering data for mKirrel2 ECD |
This paper |
SASBDB: SASDMN2 |
Small-angle X-ray scattering data and model for mKirrel3 ECD |
This paper |
SASBDB: SASDMP2 |
Small-angle X-ray scattering data and model for mKirrel3 Q128A ECD |
This paper |
SASBDB: SASDMQ2 |
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Experimental models: Cell lines |
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D. melanogaster S2 cells |
Laboratory of K. Christopher Garcia |
N/A |
Trichoplusia ni High Five (BTI-TN-5B1–4) cells |
Laboratory of K. Christopher Garcia |
Thermo Fisher B85502
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Experimental models: Organisms/strains |
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EC2-tau-lacZ mouse line (Tg(Vmn2r43-lacZ*)#Ddg) |
Cloutier et al., 2004
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N/A |
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Oligonucleotides |
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PCR genotyping WT5′- GATGATGCCGTGTATGAGTGCCAG |
This paper |
N/A |
PCR genotyping WT3′- GAAATCCAAAGGTGAGCCTCC (common to WT and Q128A alleles) |
This paper |
N/A |
PCR genotyping Q128A5′- GATGACGCCGTGTATGAGTGCGCC |
This paper |
N/A |
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Software and algorithms |
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HKL2000 |
Otwinowski and Minor, 1997
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https://hkl-xray.com/
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PHASER v. 2.6.0 |
McCoy et al., 2007
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https://www.phaser.cimr.cam.ac.uk
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PHENIX suite v. 1.19.1 |
Liebschner et al., 2019
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http://phenix-online.org/
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phenix.refine |
Afonine et al., 2012
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https://phenix-online.org/documentation/reference/refine_gui.html
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Coot |
Emsley et al., 2010
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https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
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MUSCLE v. 3.8.425 |
Edgar, 2004
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https://www.drive5.com/muscle/
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RAxML-NG v. 1.0.1 |
Kozlov et al., 2019
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https://github.com/amkozlov/raxml-ng
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RAxML v. 8.2.12 |
Stamatakis, 2014
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https://github.com/stamatak/standard-RAxML
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MODELTEST-NG |
Darriba et al., 2020
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https://github.com/ddarriba/modeltest
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PAML v. 4.8 |
Yang, 2007
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http://abacus.gene.ucl.ac.uk/software/paml.html
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SEDFIT |
Schuck, 2000
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http://www.analyticalultracentrifugation.com
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SEDNTERP |
Laue et al., 1992
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http://www.jphilo.mailway.com/download.htm
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SEDPHAT |
Schuck, 2003
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http://www.analyticalultracentrifugation.com
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GUSSI |
Brautigam, 2015. |
https://www.utsouthwestern.edu/labs/mbr/software/
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I-TASSER |
Yang and Zhang, 2015
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https://zhanglab.dcmb.med.umich.edu/I-TASSER/
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BioXTAS RAW v. 2.0.2 |
Hopkins et al., 2017
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https://bioxtas-raw.readthedocs.io/
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GNOM v. 5.0 (r10552) |
Svergun, 1992
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https://www.embl-hamburg.de/biosaxs/gnom.html
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ATSAS 3.0.2 (r12592) |
Manalastas-Cantos et al., 2021
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https://www.embl-hamburg.de/biosaxs/software.html
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DAMMIF r12593 |
Franke and Svergun, 2009
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https://www.embl-hamburg.de/biosaxs/dammif.html
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EOM r12736 |
Tria et al., 2015
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https://www.embl-hamburg.de/biosaxs/eom.html
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SASREF (from ATSAS 3.0.2, r12592) |
Petoukhov and Svergun, 2005
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https://www.embl-hamburg.de/biosaxs/sasref.html
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ASTRA v. 7.3.2.19 |
Wyatt Technology |
https://www.wyatt.com/products/software/astra.html
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Breaking-Cas |
Oliveros et al., 2016
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https://bioinfogp.cnb.csic.es/tools/breakingcas
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Fiji |
Schindelin et al., 2012
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https://imagej.net/software/fiji/
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