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. Author manuscript; available in PMC: 2021 Nov 29.
Published in final edited form as: Cell Rep. 2021 Nov 2;37(5):109940. doi: 10.1016/j.celrep.2021.109940

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal anti-Kirrel3; clone N321C/49 Neuromab Catalog no. 75–333; RRID: AB_2315857
Rabbit polyclonal anti-VGLUT2 Synaptic Systems Catalog no. 135402; RRID: AB_2187539
Anti-FLAG M2 antibody Sigma Catalog no. F3165; RRID: AB_259529
THE™ His tag antibody [iFluor 488] GenScript Catalog no. A01800
Secondary donkey anti-mouse Alexa Fluor 488 Thermo Fisher Catalog no. A-21202; RRID: AB_141607
Rat anti-HSC70/HSP73 Enzo Life Sciences Catalog no. ADI-SPA-815-D; RRID: AB_2039279
Rabbit anti-β-actin Cell Signaling Technology Catalog no. 8457P; RRID: AB_10950489

Chemicals, peptides, and recombinant proteins

Anti-DYKDDDDK G1 affinity resin GenScript Catalog no. L00432
Rhodamine-Griffonia (Bandeiraea) Simplicifolia Lectin I Vector Laboratories Catalog no. RL-1102–2
EZ-link Sulfo-NHS-SS-Biotin Thermo Fisher Catalog no. 21331
Hoechst 33342 Thermo Fisher Catalog no. H3570

Critical commercial assays

Super Signal Western Femto Kit Thermo Fisher Catalog no. 34094

Deposited data

Crystal structure and structure factors for mKirrel2 D1 This paper PDB: 7LTW
Crystal structure and structure factors for mKirrel3 D1 This paper PDB: 7LU6
Small-angle X-ray scattering data for mKirrel2 ECD This paper SASBDB: SASDMN2
Small-angle X-ray scattering data and model for mKirrel3 ECD This paper SASBDB: SASDMP2
Small-angle X-ray scattering data and model for mKirrel3 Q128A ECD This paper SASBDB: SASDMQ2

Experimental models: Cell lines

D. melanogaster S2 cells Laboratory of K. Christopher Garcia N/A
Trichoplusia ni High Five (BTI-TN-5B1–4) cells Laboratory of K. Christopher Garcia Thermo Fisher B85502

Experimental models: Organisms/strains

EC2-tau-lacZ mouse line (Tg(Vmn2r43-lacZ*)#Ddg) Cloutier et al., 2004 N/A

Oligonucleotides

PCR genotyping WT5′- GATGATGCCGTGTATGAGTGCCAG This paper N/A
PCR genotyping WT3′- GAAATCCAAAGGTGAGCCTCC (common to WT and Q128A alleles) This paper N/A
PCR genotyping Q128A5′- GATGACGCCGTGTATGAGTGCGCC This paper N/A

Software and algorithms

HKL2000 Otwinowski and Minor, 1997 https://hkl-xray.com/
PHASER v. 2.6.0 McCoy et al., 2007 https://www.phaser.cimr.cam.ac.uk
PHENIX suite v. 1.19.1 Liebschner et al., 2019 http://phenix-online.org/
phenix.refine Afonine et al., 2012 https://phenix-online.org/documentation/reference/refine_gui.html
Coot Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
MUSCLE v. 3.8.425 Edgar, 2004 https://www.drive5.com/muscle/
RAxML-NG v. 1.0.1 Kozlov et al., 2019 https://github.com/amkozlov/raxml-ng
RAxML v. 8.2.12 Stamatakis, 2014 https://github.com/stamatak/standard-RAxML
MODELTEST-NG Darriba et al., 2020 https://github.com/ddarriba/modeltest
PAML v. 4.8 Yang, 2007 http://abacus.gene.ucl.ac.uk/software/paml.html
SEDFIT Schuck, 2000 http://www.analyticalultracentrifugation.com
SEDNTERP Laue et al., 1992 http://www.jphilo.mailway.com/download.htm
SEDPHAT Schuck, 2003 http://www.analyticalultracentrifugation.com
GUSSI Brautigam, 2015. https://www.utsouthwestern.edu/labs/mbr/software/
I-TASSER Yang and Zhang, 2015 https://zhanglab.dcmb.med.umich.edu/I-TASSER/
BioXTAS RAW v. 2.0.2 Hopkins et al., 2017 https://bioxtas-raw.readthedocs.io/
GNOM v. 5.0 (r10552) Svergun, 1992 https://www.embl-hamburg.de/biosaxs/gnom.html
ATSAS 3.0.2 (r12592) Manalastas-Cantos et al., 2021 https://www.embl-hamburg.de/biosaxs/software.html
DAMMIF r12593 Franke and Svergun, 2009 https://www.embl-hamburg.de/biosaxs/dammif.html
EOM r12736 Tria et al., 2015 https://www.embl-hamburg.de/biosaxs/eom.html
SASREF (from ATSAS 3.0.2, r12592) Petoukhov and Svergun, 2005 https://www.embl-hamburg.de/biosaxs/sasref.html
ASTRA v. 7.3.2.19 Wyatt Technology https://www.wyatt.com/products/software/astra.html
Breaking-Cas Oliveros et al., 2016 https://bioinfogp.cnb.csic.es/tools/breakingcas
Fiji Schindelin et al., 2012 https://imagej.net/software/fiji/