Table 2.

A collection of recently developed or updated medically relevant non-coding RNA databases containing NGS generated data. All URLs were accessed on 22 October 2021.

Name	Disease/Pathogens	Database Content	URL	Refs.
CircRic	Cancer	circRNA	https://hanlab.uth.edu/cRic/	[141]
CircRNADisease	Various	circRNA	http://cgga.org.cn:9091/circRNADisease/	[142]
CSCD2	Cancer	circRNA miRNA	http://geneyun.net/CSCD2/	[143]
dbDEMC 3.0	Cancer	miRNA	https://www.biosino.org/dbDEMC/index	[144]
DeepBase v3.0	Cancer	ncRNA	https://rna.sysu.edu.cn/deepbase3/index.html	[42]
Lnc2Cancer 3.0	Cancer	lncRNA circRNA	http://www.bio-bigdata.net/lnc2cancer/	[145]
LncRNADisease 2.0	Various	lncRNA circRNA	http://www.rnanut.net/lncrnadisease/	[146]
LncRNASNP2	Various	lncRNA	http://bioinfo.life.hust.edu.cn/lncRNASNP2	[147]
LncTarD	Various	lncRNA miRNA	http://bio-bigdata.hrbmu.edu.cn/LncTarD/index.jsp	[148]
MiOncoCirc	Cancer	circRNA	https://mioncocirc.github.io/	[149]
mnDR v3.1	Various	ncRNA	http://www.rna-society.org/mndr/	[150]
ncRNA-eQTL	Cancer	Single nucleotide polymorphism (SNP) effects on ncRNA	http://ibi.hzau.edu.cn/ncRNA-eQTL/	[151]
ncRPheno	Various	ncRNA	http://www.liwzlab.cn/ncrpheno/ncrpheno.html	[152]
NSDNA	Nervous system disorders	ncRNA	http://bio-bigdata.hrbmu.edu.cn/nsdna/	[153]
PATHOgenex	Bacteria	Transcriptome	http://www.pathogenex.org/	[154]
TANRIC 2.0	Cancer	lncRNA	https://ibl.mdanderson.org/tanric/_design/basic/main.html	[155]
TCGA	Cancer	Transcriptome	https://portal.gdc.cancer.gov/	-
ViRBase v3.0	Viruses	ncRNA	http://www.rna-society.org/virbase/	[156]
VirusCircBase	Viruses	circRNA	http://www.computationalbiology.cn/ViruscircBase/home.html	[157]