Antibodies |
|
|
chicken anti-GFP |
Abcam |
Cat# ab13970; RRID:AB_300798 |
rabbit anti-RFP |
MBL International |
Cat# PM005; RRID:AB_591279 |
rabbit anti-GFP |
ICL Lab |
Cat# RGFP-45A |
rabbit anti-Lhx1 |
gift from Dr. Masanori Taira, Chou University |
N/A |
mouse anti-E-cadherin |
BD Transduction Laboratories |
Cat# 610182; RRID:AB_397581 |
anti-rabbit IgG Alexa 488 |
Invitrogen |
Cat# A-11008; RRID:AB_143165 |
anti-rabbit IgG Alexa 555 |
Invitrogen |
Cat# A-21428; RRID:AB_2535849 |
anti-rabbit IgG Alexa 647 |
Invitrogen |
Cat# A-21244; RRID:AB_2535812 |
anti-mouse IgG Alexa 488 |
Invitrogen |
Cat# A-11001; RRID:AB_2534069 |
anti-mouse IgG Alexa 555 |
Invitrogen |
Cat# A-21422; RRID:AB_2535844 |
anti-mouse IgG Alexa 647 |
Invitrogen |
Cat# A-21235; RRID:AB_2535804 |
anti-mouse IgG Alexa 488 |
Jackson ImmunoResearch |
Cat# 715-545-150; RRID:AB_2340846 |
anti-chicken IgY Alexa 488 |
Invitrogen |
Cat# A-11039; RRID:AB_2534096 |
rabbit anti-Daam1 |
Proteintech |
Cat# 14876-1-AP; RRID:AB_2089444 |
rabbit anti-Daam1 |
a gift from Dr. Raymond Habas’s lab, Temple University |
N/A |
rabbit anti-GAPDH |
Santa Cruz |
Cat# sc-25778; RRID:AB_10167668 |
anti-rabbit IgG (H + L)-HRP |
BioRad |
Cat# 1706515; RRID:AB_11125142 |
anti-mouse IgG (H + L)-HRP |
BioRad |
Cat# 1706516; RRID:AB_11125547 |
Chemicals, peptides, and recombinant proteins |
|
|
FITC-conjugated lectin from Erythrina cristagalli
|
Vector labs |
Cat# FL-1141; RRID:AB_2336437 |
Phalloidin-Alexa 568 |
Invitrogen |
Cat# A12380 |
diamidino-2-phenylindole (DAPI) |
Tdermo Scientific |
Cat# 62247 |
Dulbecco’s Modified Eagle’s Medium (DMEM) |
Sigma |
Cat# A5955 |
fetal bovine serum (FBS) |
Sigma |
Cat# F0926 |
Antibiotic-antimycotic solution |
Sigma |
Cat# A5955 |
2x Laemmli Sample Buffer |
BioRad |
Cat# 610737 |
Dithiothreitol |
Fisher BioReagents |
Cat# BP172-25 |
16% Formaldehyde (w/v), Methanol-free |
Thermo Scientific |
Cat# 28908 |
Fibronectin |
Roche |
Cat# 10 838 039 001 |
Ethyl 3-aminobenzoate methanesulfonate |
Sigma |
Cat# E10521
|
Critical commercial assays |
|
|
SP6 mMessage mMachine transcription kit |
TdermoFisher |
Cat# AM1340M |
KPL Detector Block Kit |
Sera Care |
Cat# 5920-0004, 71-83-00 |
SuperSignal West Pico PLUS Chemiluminescent Substrate |
Thermo Fisher |
Cat# 34580 |
Experimental models: Cell lines |
|
|
Madin-Darby Canine Kidney (MDCK) II |
American Type Culture Collection (ATCC) |
Cat# ATCC® CRL-2936 |
HEK293T cells |
a gift from Dr. Andrew Gladden’s lab, North Carolina University |
N/A |
Experimental models: Organisms/strains |
|
|
Xenopus laevis adult male frogs |
Nasco |
Cat# LM00713M |
Xenopus laevis adult female frogs |
Nasco |
Cat# LM00531MX |
Oligonucleotides |
|
|
Daam1 morpholino-5′GCCGCAGGTCTGTCAGTTGCTTCTA 3′ |
GeneTools, LLC |
Corkins et al., 2018; Habas et al., 2001; Miller et al., 2011
|
Control/Standard morpholino-5′CCTCTTACCTCAGTTACAATTTATA 3′ |
GeneTools, LLC |
Corkins et al., 2018; Miller et al., 2011
|
pLKO.1 lentiviral shDaam1 construct-TTTCAGGAGATAGTATTGTGC |
GE-Dharmacon |
Clone ID: TRCN0000122999 |
pLKO.1 lentiviral shDaam1 construct-AAACAGGTCTTTAGCTTCTGC |
GE-Dharmacon |
Clone ID: TRCN0000123000 |
Recombinant DNA |
|
|
pCS2-GFP-Daam1 |
a gift from Dr. Raymond Habas’s lab, Temple University |
Liu et al., 2008
|
pCS2-GFP-Daam1 (Ile698Ala) |
a gift from Dr. Bruce Goode’s lab, Brandeis University |
Lu et al., 2007
|
pCS2-membrane-tagged-RFP |
a gift from Dr. Raymond Keller’s lab, University of Virginia |
Davidson et al., 2006
|
pCS2- mCherry -Daam1 |
Dr. Rachel Miller’s lab, McGovern Medical School |
Corkins et al., 2019
|
pCS2-mCherry-Daam1 (Ile698Ala) |
Dr. Rachel Miller’s lab, McGovern Medical School |
Corkins et al., 2019
|
pCS2-membrane-tagged-EGFP |
a gift from Dr. John Wallingford’ lab, The University of Texas at Austin |
Shindo and Wallingford, 2014
|
pCS2-mCherry-Utrophin |
a gift from Dr. William Bement’s lab, University of Wisconsin-Madison |
Burkel et al., 2007
|
virus packaging plasmids psPAX2 and pMD2.G |
a gift from Dr. Andrew Gladden’s lab, University of North Carolina |
Williams et al., 2017
|
Software and algorithms |
|
|
Slidebook 6.0 |
3i-Intelligent Imaging Innovations Software |
https://www.intelligent-imaging.com/slidebook
|
SigmaPlot |
Systat Software |
https://systatsoftware.com/products/sigmaplot/
|
Prism 8.0 |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/
|
ImageJ (Fiji plugin) |
Open-source program |
https://imagej.nih.gov/ij/
|
Adobe Photoshop CC |
Adobe Inc. Software |
https://www.adobe.com/products/photoshop.html
|
Other |
|
|
Tweezer - Dumont no.5 |
Fisher |
Cat# NC9404145 |
Glass-bottom imaging chambers |
Tdermo |
Cat# A7816 |