Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Nov 29;11:23041. doi: 10.1038/s41598-021-02441-6

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Imaging based nuclear and chromatin features as single cell biomarkers in tissue biopsies. (a) An overview of the biomax Tissue Microarray (TMA). (b) Representative H&E stained TMA image. (c) Representative Hoescht stained TMA image. (d) The first module of the pipeline automates the thresholding, segmentation and cropping of individual nuclei from large images. A library of individual nuclei is created and passed to the second module where genome architectural (morphological and textural) features are extracted from each nucleus. The consolidated single cell data is then used for further analysis.