Table.2.
Relative synonymous codons usage of each amino acid in p30, p54, and p72 of the ASFV (Pig and Tick) sequences
| Codon | ASFV (Pig) | ASFV (Tick) | ||||
|---|---|---|---|---|---|---|
| p30 | p54 | p72 | p30 | p54 | p72 | |
| GCA | 2.13 | 0.933 | 1.229 | 1.4 | 1.091 | 1.214 |
| GCC | 0.124 | 0.703 | 0.711 | 0.6 | 1 | 0.821 |
| GCG | 0.488 | 0.626 | 0.581 | 0.733 | 0.636 | 1.06 |
| GCT | 1.258 | 1.737 | 1.479 | 1.267 | 1.273 | 0.906 |
| TGC | 1.52 | 0.421 | 1.028 | 0.906 | 1.013 | 1.023 |
| TGT | 0.48 | 1.579 | 0.972 | 1.094 | 0.987 | 0.977 |
| GAC | 0.352 | 0.926 | 0.63 | 0.588 | 1.071 | 0.508 |
| GAT | 1.648 | 1.074 | 1.37 | 1.412 | 0.929 | 1.492 |
| GAA | 1.227 | 1.155 | 1.353 | 1.436 | 1.316 | 1.357 |
| GAG | 0.773 | 0.845 | 0.647 | 0.564 | 0.684 | 0.643 |
| TTC | 0.345 | 0.796 | 0.383 | 0.76 | 0.725 | 0.683 |
| TTT | 1.655 | 1.204 | 1.617 | 1.24 | 1.275 | 1.317 |
| GGA | 1.686 | 0.952 | 1.668 | 1.254 | 1.046 | 1.025 |
| GGC | 0.179 | 1.708 | 0.841 | 0.537 | 1.785 | 0.57 |
| GGG | 0.813 | 0.539 | 0.664 | 0.776 | 0.431 | 1.266 |
| GGT | 1.322 | 0.801 | 0.827 | 1.433 | 0.738 | 1.139 |
| CAC | 0.307 | 0.155 | 0.876 | 0.739 | 0.37 | 0.921 |
| CAT | 1.693 | 1.845 | 1.124 | 1.261 | 1.63 | 1.079 |
| ATA | 0.48 | 0.534 | 0.738 | 0.849 | 1.361 | 1.032 |
| ATC | 0.537 | 0.981 | 0.778 | 0.651 | 0.681 | 0.786 |
| ATT | 1.983 | 1.485 | 1.484 | 1.5 | 0.958 | 1.182 |
| AAA | 1.252 | 1.381 | 1.157 | 1.588 | 1.525 | 1.235 |
| AAG | 0.748 | 0.619 | 0.843 | 0.412 | 0.475 | 0.765 |
| CTA | 0.452 | 2.485 | 0.304 | 0.404 | 0.537 | 0.657 |
| CTC | 0.927 | 0.601 | 0.369 | 1.169 | 1.134 | 0.715 |
| CTG | 1.682 | 0.507 | 0.685 | 0.719 | 1.493 | 1.285 |
| CTT | 0.938 | 0.407 | 2.642 | 1.708 | 0.836 | 1.343 |
| TTA | 1.073 | 0.799 | 0.409 | 0.793 | 0.925 | 0.986 |
| TTG | 0.927 | 1.201 | 1.591 | 1.207 | 1.075 | 1.014 |
| AAC | 0.569 | 1.401 | 1.043 | 0.68 | 0.955 | 0.795 |
| AAT | 1.431 | 0.599 | 0.957 | 1.32 | 1.045 | 1.205 |
| CCA | 0.247 | 2.067 | 0.599 | 0.98 | 1.263 | 1.446 |
| CCC | 1.317 | 0.089 | 1.58 | 0.98 | 0.895 | 1.205 |
| CCG | 0.115 | 1.108 | 0.494 | 0.49 | 0.895 | 0.691 |
| CCT | 2.321 | 0.735 | 1.327 | 1.551 | 0.947 | 0.659 |
| CAA | 1.527 | 1.178 | 0.965 | 1.404 | 1.436 | 0.986 |
| CAG | 0.473 | 0.822 | 1.035 | 0.596 | 0.564 | 1.014 |
| AGA | 1.802 | 1.603 | 1.746 | 1.404 | 1.231 | 1.119 |
| AGG | 0.198 | 0.397 | 0.254 | 0.596 | 0.769 | 0.881 |
| CGA | 0.356 | 0.635 | 0.912 | 1.6 | 0.286 | 0.807 |
| CGC | 0.83 | 0.413 | 2.064 | 0.933 | 1.429 | 0.982 |
| CGG | 0.385 | 2.598 | 0.226 | 0.667 | 1.238 | 0.719 |
| CGT | 2.43 | 0.354 | 0.797 | 0.8 | 1.048 | 1.491 |
| AGC | 1.215 | 0.865 | 0.934 | 0.85 | 1.255 | 1.235 |
| AGT | 0.785 | 1.135 | 1.066 | 1.15 | 0.745 | 0.765 |
| TCA | 1.628 | 1.239 | 0.876 | 1.091 | 0.723 | 0.937 |
| TCC | 1.166 | 0.853 | 1.018 | 1.5 | 0.771 | 1.228 |
| TCG | 0.273 | 0.459 | 1.061 | 0.364 | 0.53 | 0.835 |
| TCT | 0.932 | 1.45 | 1.044 | 1.045 | 1.976 | 1 |
| ACA | 1.165 | 1.358 | 0.692 | 1.086 | 1 | 1.21 |
| ACC | 1.068 | 0.531 | 1.404 | 1.086 | 1.067 | 1.031 |
| ACG | 0.812 | 0.813 | 1.307 | 0.629 | 0.533 | 1.1 |
| ACT | 0.955 | 1.298 | 0.597 | 1.2 | 1.4 | 0.66 |
| GTA | 0.555 | 0.353 | 1.462 | 0.471 | 0.634 | 1.075 |
| GTC | 0.668 | 1.714 | 0.394 | 0.765 | 1.465 | 0.583 |
| GTG | 1.468 | 0.337 | 1.152 | 1.235 | 0.356 | 0.965 |
| GTT | 1.309 | 1.596 | 0.993 | 1.529 | 1.545 | 1.377 |
| TAC | 0.121 | 0.182 | 1.149 | 0.667 | 1.059 | 0.948 |
| TAT | 1.879 | 1.818 | 0.851 | 1.333 | 0.941 | 1.052 |
Bold values indicate the overrepresented codons
The Average of all the 59 synonymous codons in p30, p54, and p72 of the ASFV (Pig and Tick)