Table 4. Bacterial species isolated from polyacrylamide gel based on DGGE method.
| Bacteria | Patients Cases | Controls | Significance (P value) | Accession number or ID submission | Odd Ratio |
|---|---|---|---|---|---|
| N (%) genera | N (%) genera | ||||
| B1 | 8 (%6.01) | 1 (%0.7) | ≤(0.001)* | MW880919 (submitted) | 8.8 |
| B2 | 4 (%3) | 4 (%2.8) | NS1 | JQ477416.1 | 1.3 |
| B4 | 9 (%6.7) | 2 (%1.4) | ≤(0.001)* | KF074888.1 | 12.4 |
| B5 | 5 (%3.75) | 3 (%2.1) | NS | MW880920 (submitted) | 1.3 |
| B6,S20 | 11 (%8.3) | 3 (%2.1) | ≤(0.001)* | JX069809.1 | 4.5,0.0 |
| B7 | 3 (%2.25) | 3 (%2.1) | NS | MW880921 (submitted) | 2.07 |
| B8 | 2 (%1.5) | 3 (%2.1) | NS | JQ449863.1 | 1 |
| B9 | 4 (%3) | 3 (%2.1) | NS | KF599923.1 | 1 |
| B10 | 4 (%3) | 3 (%2.1) | NS | GQ089813.1 | 1.5 |
| B11 | 3 (%2.25) | 3 (%2.1) | NS | JF178594.1 | 0.64 |
| B12 | 2 (%1.5) | 2 (%1.4) | NS | JQ460583.1 | 1 |
| B13,S15 | 2 (%1.5) | 10 (%7.04) | ≤(0.001)* | EF508938.1 | 0.167,0.48 |
| B16 | 10 (%7.5) | 1 (%0.7) | ≤(0.001)* | JF198912.1 | 12.4 |
| B17,S5,S6,S10 | 9 (%6.76) | 8 (%5.6) | NS | MT613456.1 | 3.2,1.5,0.64,0.48 |
| B18 | 3 (%2.25) | 3 (%2.1) | NS | MW880922 (submitted) | 1 |
| B19 | 5 (%3.75) | 5 (%3.5) | NS | JF052766.1 | 1 |
| B20 | 2 (%1.5) | 11 (%7.7) | ≤(0.001)* | CP054883.1 | 0.143 |
| B21,S4 | 4 (%3) | 5 (%3.5) | NS | JQ460619.1 | 0.64,1 |
| B22 | 3 (%2.25) | 2 (%1.4) | NS | HM265276.1 | 2.07 |
| B23 | 6 (%4.5) | 3 (%2.1) | NS | JF195658.1 | 1.62 |
| S1 | 4 (%3) | 4 (%2.8) | NS | MW880923 (submitted) | 4.4 |
| S2 | 4 (%3) | 4 (%2.8) | NS | MN400008.1 | 1 |
| S3 | 5 (%3.75) | 4 (%2.8) | NS | KY436503.1 | 1.30 |
| S7 | 1 (%0.75) | 4 (%2.8) | NS | MT138558.1 | 0.3 |
| S8 | 1 (%0.75) | 1 (%0.7) | NS | KY623059.1 | 1 |
| S9 | 2 (%1.5) | 10 (%7.04) | ≤(0.001)* | JQ462822.1 | 0.167 |
| S11 | 2 (%1.5) | 2 (%1.4) | NS | MW880924 (submitted) | 1 |
| S12 | 3 (%2.25) | 4 (%2.8) | NS | MW880925 (submitted) | 0.7 |
| S14 | 3 (%2.25) | 1 (%0.7) | NS | KF101581.1 | 1 |
| S16 | 1 (%0.75) | 2 (%1.4) | NS | KF067341.1 | 1 |
| S17 | 2 (%1.5) | 8 (%5.6) | ≤(0.001)* | HM269358.1 | 0.196 |
| S19 | 1 (%0.75) | 2 (%1.4) | NS | KC708270.1 | 0.48 |
| S21 | 2 (%1.5) | 2 (%1.4) | NS | EU986018.1 | 1 |
| S22 | 2 (%1.5) | 4 (%2.8) | NS | LC358461.1 | 0.6 |
| S23 | 0 (%0) | 2 (%1.4) | NS | JQ818398.1 | 0 |
| S25 | 1 (%0.75) | 10 (%7.04) | ≤(0.001)* | MT597603.1 | .080 |
* Significant, 1: Not Significant