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. 2021 Nov 30;15(11):e0009982. doi: 10.1371/journal.pntd.0009982

Table 1. In silico prediction of the HSP70-I-3′-UTR-BsuRI restriction fragments and fragment sizes in PCR-RFLP.

Leishmania species Isolates Accession number PCR product size (bp) BsuRI restriction fragments Fragment sizes (bp) by in silico prediction Fragment sizes (bp) on 3% agarose gel
L. martiniquensis MHOM/MQ/1992/MAR1;LEM2494 MK607435 482 3 343, 131, 8 ND
MHOM/TH/2012/LSCM1 MK607436 480 3 341, 131, 8 341, 131
MHOM/TH/2013/LSCM2 MK60737 482 3 343, 131, 8 ND
MHOM/TH/2013/LSCM3 MK60738 480 3 341, 131, 8 ND
MHOM/TH/2015/LSCM5 MK60739 480 3 341, 131, 8 ND
L. orientalis MHOM/TH/2014/LSCM4 MK607444 674 4 300, 286, 82, 6 300–286a, 82
L. braziliensis MHOM/GT/2001/U1096 MK607440 562 4 330, 104, 81, 47 330, 104–81a
L. guyanensis MHOM/BR/1975/M4147 MK607441 627 3 442, 104, 81 >500, 442, 104–81a
L. panamensis MHOM/PA/1971/LS94 MK607442 629 3 444, 104, 81 >500, 442, 104–81a
L. mexicana MNYC/BZ/1962/M379 MK607446 738 3 325, 237, 176 325, 237, 176
L. aethiopica MHOM/ET/1972/L100;LV546 HE575327 742 3 321, 243, 178 321, 243, 178
L. amazonensis MHOM/BR/1997/M2269 MK607447 740 3 413, 216, 111 413, 216, 111
L. tropica MHOM/IR/1960/LV357 MK607448 746 3 321, 243, 182 321, 243, 182
L. donovani MHOM/ET/1967/HU3;LV9 HE575332 753 4 437, 165, 124, 27 437, 165, 124
L. major MHOM/IL/1980/FV1 MK607449 759 4 323, 188, 178, 70 323, 188–178a, 70
L. infantum MCAN/ES/1998/JPCM5 MK607450 773 4 436, 182, 128, 27 436, 182, 128

ND = not done

aMerged band from 2 DNA fragments that were different in size approximately 20 bp or less.