Table 1. In silico prediction of the HSP70-I-3′-UTR-BsuRI restriction fragments and fragment sizes in PCR-RFLP.
Leishmania species | Isolates | Accession number | PCR product size (bp) | BsuRI restriction fragments | Fragment sizes (bp) by in silico prediction | Fragment sizes (bp) on 3% agarose gel |
---|---|---|---|---|---|---|
L. martiniquensis | MHOM/MQ/1992/MAR1;LEM2494 | MK607435 | 482 | 3 | 343, 131, 8 | ND |
MHOM/TH/2012/LSCM1 | MK607436 | 480 | 3 | 341, 131, 8 | 341, 131 | |
MHOM/TH/2013/LSCM2 | MK60737 | 482 | 3 | 343, 131, 8 | ND | |
MHOM/TH/2013/LSCM3 | MK60738 | 480 | 3 | 341, 131, 8 | ND | |
MHOM/TH/2015/LSCM5 | MK60739 | 480 | 3 | 341, 131, 8 | ND | |
L. orientalis | MHOM/TH/2014/LSCM4 | MK607444 | 674 | 4 | 300, 286, 82, 6 | 300–286a, 82 |
L. braziliensis | MHOM/GT/2001/U1096 | MK607440 | 562 | 4 | 330, 104, 81, 47 | 330, 104–81a |
L. guyanensis | MHOM/BR/1975/M4147 | MK607441 | 627 | 3 | 442, 104, 81 | >500, 442, 104–81a |
L. panamensis | MHOM/PA/1971/LS94 | MK607442 | 629 | 3 | 444, 104, 81 | >500, 442, 104–81a |
L. mexicana | MNYC/BZ/1962/M379 | MK607446 | 738 | 3 | 325, 237, 176 | 325, 237, 176 |
L. aethiopica | MHOM/ET/1972/L100;LV546 | HE575327 | 742 | 3 | 321, 243, 178 | 321, 243, 178 |
L. amazonensis | MHOM/BR/1997/M2269 | MK607447 | 740 | 3 | 413, 216, 111 | 413, 216, 111 |
L. tropica | MHOM/IR/1960/LV357 | MK607448 | 746 | 3 | 321, 243, 182 | 321, 243, 182 |
L. donovani | MHOM/ET/1967/HU3;LV9 | HE575332 | 753 | 4 | 437, 165, 124, 27 | 437, 165, 124 |
L. major | MHOM/IL/1980/FV1 | MK607449 | 759 | 4 | 323, 188, 178, 70 | 323, 188–178a, 70 |
L. infantum | MCAN/ES/1998/JPCM5 | MK607450 | 773 | 4 | 436, 182, 128, 27 | 436, 182, 128 |
ND = not done
aMerged band from 2 DNA fragments that were different in size approximately 20 bp or less.