| Software, algorithm |
Python3,Numpy,Pandas, |
|
Python Programming Language, RRID:SCR_008394NumPy, RRID:SCR_00863Pandas, RRID:SCR_01821
|
|
| Software, algorithm |
R, ggplot2 |
|
R Project for Statistical Computing, RRID:SCR_001905ggplot2, RRID:SCR_014601
|
|
| Software, algorithm |
tcrdist3 |
This study |
tcrdist3 0.2.0 |
https://github.com/kmayerb/tcrdist3
|
| Software, algorithm |
pwseqdist |
This study |
pwseqdist 0.5 |
https://github.com/agartland/pwseqdist
|
| Script, algorithm |
hla3 |
This study |
version 0.1.0 |
https://github.com/kmayerb/hla3
|
| Software, algorithm |
corncob |
Martin et al., 2020doi:10.1214/19-aoas1283
|
|
https://github.com/bryandmartin/corncob (Martin, 2021) |
| Software, algorithm |
OLGA |
Sethna et al., 2019
10.1093/bioinformatics/btz035
|
|
https://github.com/statbiophys/OLGA(Isacchini, 2021) See slight modifications in: https://github.com/kmayerb/tcrdist3/blob/master/tcrdist/olga_directed.py
|
| Software, algorithm |
GLIPH2 |
Huang et al., 2020
10.1038/s41587-020-0505-4
|
version 2 |
http://50.255.35.37:8,080 |
