Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Nov 12;12:740068. doi: 10.3389/fmicb.2021.740068

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

Copyright © 2021 Pelerito, Nunes, Grilo, Isidro, Silva, Ferreira, Valdezate, Núncio, Georgi and Gomes.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

PMC Copyright notice

Influence of the mean coverage depth and number of contigs on the efficacy of the WGS-based MLVA extraction. The graphs show the correlation of the efficacy (measured by the number of loci for which an allele was called) of the bioinformatics script with the number of assembled contigs (A) and with the depth of coverage (B) after quality improvement. For (A,B), the tendency lines are shown with the respective equations and the Pearson coefficient (r). The WGS-based results are relative to the MLVA loci extraction using draft genomes assembled with the INNUca v4.0.1 pipeline using Pilon v1.18 (Bankevich et al., 2012).