Antibodies |
|
Anti-Flag M2 magnetic beads |
Sigma-Aldrich |
M8823 |
Anti-Flag M2 mouse |
Sigma-Aldrich |
P2983, RRID:AB_439685
|
Anti-Flag M2 affinity gel |
Sigma-Aldrich |
A2220 |
Anti-Sui2 (rabbit) |
Dr T. Dever, NIH |
|
Anti-Gcn3 |
Dr A. Hinnebusch, NIH |
|
Anti-Gcd7 |
Dr A. Hinnebusch, NIH |
|
Anti-Gcd6 |
Dr A. Hinnebusch, NIH |
|
Anti-Gcd2 |
Dr A. Hinnebusch, NIH |
|
Anti-Tef1 |
Dr C. Grant, Univ. Manchester UK |
|
IRDye® 800CW goat anti-rabbit IgG |
LI-COR Biosciences |
926-32211, RRID:AB_621843
|
IRDye® 680RD goat anti-mouse IgG |
LI-COR Biosciences |
925-68070, RRID:AB_2651128
|
|
Bacterial and virus strains |
|
E. coli XL1-Blue Supercompetent Cells |
Agilent |
200523 |
|
Chemicals, peptides, and recombinant proteins |
|
Complete Protease Inhibitor mini tablets, EDTA free |
Roche |
11836170001 |
Yeast Nitrogen Base Without Amino Acids |
Formedium |
CYN0402 |
SC, Double Drop-Out -Leu, -Ura |
Formedium |
DSCK1017 |
5-Fluoro Orotic Acid Monohydrate |
Formedium |
5FOA05 |
3-Amino-1,2,4-triazole |
Sigma-Aldrich |
A8056 |
Adenine |
Sigma-Aldrich |
A8626 |
Guanine |
Sigma-Aldrich |
G11950 |
Guanosine 5′-triphosphate sodium salt hydrate |
Sigma-Aldrich |
G8877 |
Guanosine 5′-diphosphate sodium salt |
Sigma-Aldrich |
G7127 |
Adenosine 5′-diphosphate sodium salt |
Sigma-Aldrich |
A2754 |
Guanosine 5'-Diphosphate, BODIPY™ FL 2'-(or-3')-O-(N-(2-Aminoethyl) Urethane), Bis (Triethylammonium) Salt) |
ThermoFisher |
G22360 |
GTP, [α-32P]- 3000Ci/mmol 10mCi/ml |
PerkinElmer |
BLU006H250UC |
Ultima Gold F |
PerkinElmer |
6013179 |
|
Critical commercial assays |
|
QuikChange II site direct mutagenesis |
Agilent |
200523 |
NiNTA agarose |
Qiagen |
30210 |
HiTrap heparin |
Cytiva |
17-0407-01 |
HiTrap Q |
Cytiva |
17-1153-01 |
|
Experimental models: Organisms/strains |
|
Saccharomyces cerevisiae strains derived from S288c |
Lab collection |
see Table S1
|
|
Oligonucleotides |
|
GCGCTTGCCCGCGGCTCTTTTGCCCATCGGTAATAG |
Sigma-Aldrich |
K66A F |
GCAAAAGAGCCGCGGGCAAGCGCGTTGAATGTTGC |
Sigma-Aldrich |
K66A R |
GCGCTTGCCCGACGCTCTTTTGCCCATCGGTAATAG |
Sigma-Aldrich |
K66D F |
GCAAAAGAGCGTCGGGCAAGCGCGTTGAATGTTGC |
Sigma-Aldrich |
K66D R |
GCGCTTGCCCAGGGCTCTTTTGCCCATCGGTAATAG |
Sigma-Aldrich |
K66R F |
GCAAAAGAGCCCTGGGCAAGCGCGTTGAATGTTGC |
Sigma-Aldrich |
K66R R |
CTTGCCCTGCGCATTTGTCACAGATATACCTCCACAAGTC |
Sigma-Aldrich |
D173A F |
CTGTGACAAATGCGCAGGGCAAGATTACAAAATCGCCATTG |
Sigma-Aldrich |
D173A R |
CTTGCCCTGTAAGTTTGTCACAGATATACCTCCACAAGTC |
Sigma-Aldrich |
D173K F |
CTGTGACAAACTTACAGGGCAAGATTACAAAATCGCCATTG |
Sigma-Aldrich |
D173K R |
CTTGCCCTGTAATTTTGTCACAGATATACCTCCACAAGTC |
Sigma-Aldrich |
D173N F |
CTGTGACAAAATTACAGGGCAAGATTACAAAATCGCCATTG |
Sigma-Aldrich |
D173N R |
GACAGACTCTTATGAAACTAAATTTATGCCAC |
Sigma-Aldrich |
R39K F |
CAGCTGTCAGTGGCATAAATTTAGTTTCATAAG |
Sigma-Aldrich |
R39K R |
GACAGACTCTTATGAAAACTGATTTTATGCCAC |
Sigma-Aldrich |
R39D F |
CAGCTGTCAGTGGCATAAAATCAGTTTCATAAG |
Sigma-Aldrich |
R39D R |
GACAGACTCTTATGAAACTGAATTTATGCCAC |
Sigma-Aldrich |
R39E F |
CAGCTGTCAGTGGCATAAATTCAGTTTCATAAG |
Sigma-Aldrich |
R39E R |
GATTTTATTTTAGTCAGTGGTAATGTATTGACTAAC |
Sigma-Aldrich |
D138N F |
GCTGAAATCGATGTTAGTCAATACATTACCACTGAC |
Sigma-Aldrich |
D138N R |
GATTTTATTTTAGTCAGTGGTAAAGTATTGACTAAC |
Sigma-Aldrich |
D138K F |
GCTGAAATCGATGTTAGTCAATACTTTACCACTGAC |
Sigma-Aldrich |
D138K R |
|
Recombinant DNA |
|
Yeast expression plasmids |
This study or cited references |
See Table S2
|
|
Software and algorithms |
|
UCSF Chimera 1.15 |
|
(Pettersen et al., 2004) |
homology modelling server SWISS-MODEL |
|
(Waterhouse et al., 2018) |
PISA |
|
(Krissinel and Henrick, 2007) |
FluorEssence |
Horiba Scientific |
|
ImageStudio |
Li-Cor BioSciences |
|