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. 2021 Nov 14;24(12):103454. doi: 10.1016/j.isci.2021.103454
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-Flag M2 magnetic beads Sigma-Aldrich M8823
Anti-Flag M2 mouse Sigma-Aldrich P2983, RRID:AB_439685
Anti-Flag M2 affinity gel Sigma-Aldrich A2220
Anti-Sui2 (rabbit) Dr T. Dever, NIH
Anti-Gcn3 Dr A. Hinnebusch, NIH
Anti-Gcd7 Dr A. Hinnebusch, NIH
Anti-Gcd6 Dr A. Hinnebusch, NIH
Anti-Gcd2 Dr A. Hinnebusch, NIH
Anti-Tef1 Dr C. Grant, Univ. Manchester UK
IRDye® 800CW goat anti-rabbit IgG LI-COR Biosciences 926-32211, RRID:AB_621843
IRDye® 680RD goat anti-mouse IgG LI-COR Biosciences 925-68070, RRID:AB_2651128

Bacterial and virus strains

E. coli XL1-Blue Supercompetent Cells Agilent 200523

Chemicals, peptides, and recombinant proteins

Complete Protease Inhibitor mini tablets, EDTA free Roche 11836170001
Yeast Nitrogen Base Without Amino Acids Formedium CYN0402
SC, Double Drop-Out -Leu, -Ura Formedium DSCK1017
5-Fluoro Orotic Acid Monohydrate Formedium 5FOA05
3-Amino-1,2,4-triazole Sigma-Aldrich A8056
Adenine Sigma-Aldrich A8626
Guanine Sigma-Aldrich G11950
Guanosine 5′-triphosphate sodium salt hydrate Sigma-Aldrich G8877
Guanosine 5′-diphosphate sodium salt Sigma-Aldrich G7127
Adenosine 5′-diphosphate sodium salt Sigma-Aldrich A2754
Guanosine 5'-Diphosphate, BODIPY™ FL 2'-(or-3')-O-(N-(2-Aminoethyl) Urethane), Bis (Triethylammonium) Salt) ThermoFisher G22360
GTP, [α-32P]- 3000Ci/mmol 10mCi/ml PerkinElmer BLU006H250UC
Ultima Gold F PerkinElmer 6013179

Critical commercial assays

QuikChange II site direct mutagenesis Agilent 200523
NiNTA agarose Qiagen 30210
HiTrap heparin Cytiva 17-0407-01
HiTrap Q Cytiva 17-1153-01

Experimental models: Organisms/strains

Saccharomyces cerevisiae strains derived from S288c Lab collection see Table S1

Oligonucleotides

GCGCTTGCCCGCGGCTCTTTTGCCCATCGGTAATAG Sigma-Aldrich K66A F
GCAAAAGAGCCGCGGGCAAGCGCGTTGAATGTTGC Sigma-Aldrich K66A R
GCGCTTGCCCGACGCTCTTTTGCCCATCGGTAATAG Sigma-Aldrich K66D F
GCAAAAGAGCGTCGGGCAAGCGCGTTGAATGTTGC Sigma-Aldrich K66D R
GCGCTTGCCCAGGGCTCTTTTGCCCATCGGTAATAG Sigma-Aldrich K66R F
GCAAAAGAGCCCTGGGCAAGCGCGTTGAATGTTGC Sigma-Aldrich K66R R
CTTGCCCTGCGCATTTGTCACAGATATACCTCCACAAGTC Sigma-Aldrich D173A F
CTGTGACAAATGCGCAGGGCAAGATTACAAAATCGCCATTG Sigma-Aldrich D173A R
CTTGCCCTGTAAGTTTGTCACAGATATACCTCCACAAGTC Sigma-Aldrich D173K F
CTGTGACAAACTTACAGGGCAAGATTACAAAATCGCCATTG Sigma-Aldrich D173K R
CTTGCCCTGTAATTTTGTCACAGATATACCTCCACAAGTC Sigma-Aldrich D173N F
CTGTGACAAAATTACAGGGCAAGATTACAAAATCGCCATTG Sigma-Aldrich D173N R
GACAGACTCTTATGAAACTAAATTTATGCCAC Sigma-Aldrich R39K F
CAGCTGTCAGTGGCATAAATTTAGTTTCATAAG Sigma-Aldrich R39K R
GACAGACTCTTATGAAAACTGATTTTATGCCAC Sigma-Aldrich R39D F
CAGCTGTCAGTGGCATAAAATCAGTTTCATAAG Sigma-Aldrich R39D R
GACAGACTCTTATGAAACTGAATTTATGCCAC Sigma-Aldrich R39E F
CAGCTGTCAGTGGCATAAATTCAGTTTCATAAG Sigma-Aldrich R39E R
GATTTTATTTTAGTCAGTGGTAATGTATTGACTAAC Sigma-Aldrich D138N F
GCTGAAATCGATGTTAGTCAATACATTACCACTGAC Sigma-Aldrich D138N R
GATTTTATTTTAGTCAGTGGTAAAGTATTGACTAAC Sigma-Aldrich D138K F
GCTGAAATCGATGTTAGTCAATACTTTACCACTGAC Sigma-Aldrich D138K R

Recombinant DNA

Yeast expression plasmids This study or cited references See Table S2

Software and algorithms

UCSF Chimera 1.15 (Pettersen et al., 2004)
homology modelling server SWISS-MODEL (Waterhouse et al., 2018)
PISA (Krissinel and Henrick, 2007)
FluorEssence Horiba Scientific
ImageStudio Li-Cor BioSciences