Table 1. Expression of hfb-encoding genes during four stages of Trichoderma development as quantified by qPCR in relation to the housekeeping gene tef1 [1].
The complementary principal component analysis is shown in S1 Fig.
| Parental strain NCBI Genome ID | hfb gene name | NCBI Accession Numbers | Relative gene expression | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Spore germination | Trophic hyphae | Aerial hyphae | Conidiation | ||||||||
| Fold expression | SD | Fold expression | SD | Fold expression | SD | Fold expression | SD | ||||
| T. harzianum CBS 226.95 (MBGI00000000.1) | - | PTB60449 | MF527127 | 0 | 0 | 0 | 0 | ||||
| hfb3 | PTB52129 | MF527128 | 0 | 7.02E-05 | 2.9E-05 | 4.93E-01 | 1.6E-01 | 6.14E-02 | 7.4E-03 | ||
| hfb4 | PTB58174 | MF527129 | 4.67E-05 | 9.0E-06 | 3.11E-04 | 8.9E-06 | 3.47E+00 | 3.7E-02 | 1.27E+00 | 2.2E-01 | |
| hfb5 | PTB53925 | MF527130 | 0 | 0 | 0 | 0 | |||||
| hfb6 | PTB60167 | MF527131 | 0 | 0 | 0 | 0 | |||||
| hfb2 * | PTB60601 | MF527132 | 0 | 1.08E-01 | 1.9E-02 | 1.06E+00 | 2.1E-01 | 1.75E-01 | 2.3E-02 | ||
| hfb9a | PTB50855 | MF527133 | 0 | 9.43E-06 | 4.3E-06 | 2.37E-05 | 6.7E-06 | 1.73E-03 | 3.6E-04 | ||
| hfb9b | PTB48391 | MF527134 | 0 | 6.62E-06 | 1.8E-06 | 2.26E-04 | 1.3E-04 | 5.95E-04 | 6.1E-05 | ||
| hfb10 | PTB48206 | MF527135 | 2.85E-01 | 2.5E-02 | 1.47E-01 | 4.6E-02 | 2.14E+00 | 3.0E-01 | 7.66E-01 | 1.1E-01 | |
| - | PTB49111 | MF527136 | 0 | 8.54E-04 | 7.9E-05 | 5.23E-04 | 1.1E-04 | 5.39E-05 | 1.4E-05 | ||
| - | PTB56946 | MF527138 | 0 | 0 | 0 | 0 | |||||
| T. guizhouense NJAU 4742 (LVVK00000000.1) | hfb3 | OPB45549 | MF527117 | 0 | 9.68E-03 | 1.1E-03 | 3.19E-01 | 4.5E-02 | 1.59E-02 | 3.8E-03 | |
| hfb4 | OPB37525 | MF527118 | 1.58E-04 | 6.2E-05 | 1.12E-02 | 2.5E-03 | 1.30E+00 | 1.6E-01 | 7.36E-01 | 1.7E-01 | |
| hfb5 | n.a. | MF527119 | 0 | 1.22E-04 | 4.1E-05 | 4.88E-03 | 5.8E-04 | 3.18E-02 | 5.2E-03 | ||
| hfb6 | OPB38878 | MF527120 | 0 | 0 | 0 | 0 | |||||
| hfb2 * | OPB38530 | MF527121 | 0 | 1.87E-01 | 1.5E-02 | 7.66E-01 | 1.2E-01 | 2.83E-02 | 1.0E-02 | ||
| hfb9a | OPB40515 | MF527122 | 0 | 6.32E-06 | 1.4E-06 | 6.58E-06 | 3.6E-06 | 3.69E-04 | 9.0E-05 | ||
| hfb9b | OPB44528 | MF527123 | 0 | 3.39E-03 | 6.9E-04 | 7.15E-03 | 1.1E-03 | 2.35E-03 | 3.7E-04 | ||
| hfb10 | OPB44696 | MF527124 | 1.90E+00 | 8.0E-01 | 1.31E+01 | 3.7E-01 | 1.42E+01 | 2.7E+00 | 2.34E+00 | 2.2E-01 | |
| - | OPB45278 | MF527125 | 0 | 3.53E-06 | 2.2E-06 | 1.73E-05 | 5.9E-06 | 0.0019 | 2.6E-04 | ||