Table 4.
Representative DENV virus isolates/strains used for reconstruction of phylogenetic tree
| s/n | DENV isolate/strain | Country | Year | Serotype | Genetic distance* | Accession no | Reference | |
|---|---|---|---|---|---|---|---|---|
| 1 | DENV-1/TAN/DAR-S1/2019 | Tanzania | 2019 | DENV-1 | 0.000 | MT835384 | This study | |
| 2 | DENV-1/TAN/DAR-S2/2019 | Tanzania | 2019 | DENV-1 | 0.000 | MT835385 | This study | |
| 3 | DENV-1/TAN/DAR-S3/2019 | Tanzania | 2019 | DENV-1 | 0.004 | MT835386 | This study | |
| 4 | 19XN09422 | China | 2019 | DENV-1 | 0.000 | MN923102.1 | NCBI** | |
| 5 | 19XN08100 | China | 2019 | DENV-1 | 0.000 | MN923101.1 | NCBI | |
| 6 | 19XN51128 | China | 2019 | DENV-1 | 0.000 | MN923096.1 | NCBI | |
| 7 | 19XN25802 | China | 2019 | DENV-1 | 0.000 | MN923085.1 | NCBI | |
| 8 | NU1876 | India | 2018 | DENV-1 | 0.004 | MK796420.1 | NCBI | |
| 9 | STM1818 | India | 2017 | DENV-1 | 0.004 | MT126440.1 | NCBI | |
| 10 | STM1369 | India | 2016 | DENV-1 | 0.004 | MT126438.1 | NCBI | |
| 11 | STM20778 | India | 2015 | DENV-1 | 0.004 | MT126436.1 | NCBI | |
| 12 | 01/21,123 | Brazil | 2011 | DENV-1 | 0.042 | JN092559.1 | NCBI | |
| 13 | Comoros 04.329/93 | Comoros | 1993 | DENV-1 | 0.030 | DQ285562.1 | NCBI | |
| 14 | Angola_2013 | Angola | 2013 | DENV-1 | 0.090 | KF184975 | [33] | |
| 15 | 295arg00 | Argentina | 2002 | DENV-1 | 0.038 | AF514885.3 | [34] | |
| 16 | 19,492 | Singapore | 2016 | DENV-1 | 0.004 | MF033253. | [35] | |
| 17 | 2006Den-1 | India | 2006 | DENV-1 | 0.042 | EF080814.2 | [36] | |
| 18 | MG-2/2013 | Brazil | 2013 | DENV-1 | 0.054 | KM093798.1 | NCBI | |
| 19 | 22,125 | Singapore | 2015 | DENV-1 | 0.007 | MF033237.1 | [35] | |
| 20 | C | Brazil | 2010 | DENV-2 | 0.574 | JN086992.1 | [37] | |
| 21 | DENV2/TAN/Muhimbili/2014 | Tanzania | 2014 | DENV-2 | 0.550 | KM892496.1 | [18] | |
| 22 | DENV2/TAN/IFM/2013 | Tanzania | 2014 | DENV-2 | 0.550 | KM892493.1 | [18] | |
| 23 | MDU140 | India | 2017 | DENV-2 | 0.697 | LR595983.1 | NCBI | |
| 24 | 21/RMRC/Orissa/2011 | India | 2011 | DENV-3 | 0.412 | JQ717295.1 | [38] | |
| 25 | BH-1/2006 | Brazil | 2006 | DENV-3 | 0.404 | GQ330909.1 | [39] | |
| 26 | Strain 251,991 | Kenya | 1991 | DENV-3 | 0.404 | AF547239.1 | [40] | |
| 27 | 89-SriLan3 | Sri Lanka | 2016 | DENV-3 | 0.378 | AF547232.1 | [40] | |
| 28 | IND/JIPMER/2866 | India | 2017 | DENV-4 | 0.697 | MH431924.1 | NCBI | |
| 29 | PHR3C10D4/2014 | Philippines | 2014 | DENV-4 | 0.764 | KT070878.1 | NCBI | |
| 30 | B1008 | French Guiana | 2006 | DENV-4 | 0.735 | EU518596.1 | [41] | |
| 31 | Den-M18/2010 | India | 2010 | DENV-4 | 0.697 | KM507024.1 | NCBI | |
*The number of base substitutions per site from between sequences was estimated using Kimura-2 parameter model [42], **NCBI, National Center for Biotechnology Information nucleotide database available at https://www.ncbi.nlm.nih.gov/nuccore/