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. 2021 Nov 27;15:11779322211059238. doi: 10.1177/11779322211059238

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© The Author(s) 2021

This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).

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Figure 1. — Processing speed and simplified comparative-workflow. (A) Processing speed (genomes/minute) of FastMLST and standard software for MLST determination (mlst, PubMLST, CGE/MLST, and MLSTar) was compared by triplicate using 3 Burkholderia cepacia (n = 186), Clostridium botulinum (n = 250), and Mycoplasma pneumoniae (n = 175) datasets and 1, 2, 4, 8, 16, 32, and 64 CPUs. Error bars represent the standard error of 3 replicates. Only mlst, MLSTar, and FastMLST natively support parallel processing. (B) FastMLST and MLSTar workflow. (C) mlst, PubMLST, and CGE/MLST workflow. CPU indicates central processing unit; MLST, Multilocus Sequence Typing.