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. 2021 Dec 2;16(12):e0260714. doi: 10.1371/journal.pone.0260714

Fig 1. Viral genome sequencing of 264 SARS-CoV-2 samples with Oxford nanopore.

Fig 1

(A) Cumulative distribution of genome completeness using the ARTIC bioinformatics SOP (see methods). Dashed vertical line corresponds to the 80% completeness threshold used for phylogenetic reconstruction. (B) Relationship between CN score at diagnosis, as measured by the Abbott RealTime M2000rt device (higher CN = lower viral load), and genome completeness. (C) Relationship between number of quality passed reads filtered using the ARTIC bioinformatics SOP and genome completeness.