TABLE 1.
Putative Salmonella genomic islands in the genomes of Salmonella isolates.
| Strain ID | Serotype | SGI | Size | Accession | Position | Top non-Salmonella hit of organism and coverage, identity | Accession# | Resistance genes |
| F18S012 F18S028 F18S031 N16S132 | Typhimurium | SGI-1 | 47,722 | OK209931 | SPI-3, SPI-4 | Proteus mirabilis (89%, 100%) | KJ186152.1 | qacEdelta1 blaCARB–2 tet(G) floR sul1 qacEdelta1 aadA2 |
| N17S016 | Typhimurium | SGI-1 | 38,450 | OK209935 | SPI-3, SPI-4 | Proteus mirabilis (89%, 100%) | KJ186152.1 | sul1 qacEdelta1 bla CARB– 2 |
| N17S1441 N18S0357 | Derby | SGI-1 | 43,948 | OK209937 | SPI-3, SPI-4 | Proteus mirabilis (89%, 100%) | MK422178.1 | tet(A) merR merT merP merC sul1 qacEdelta1 |
| N18S0789 | Derby | SGI-1 | 44,852 | OK209939 | SPI-3, SPI-4 | Proteus mirabilis (64%, 100%) | MK422178.1 | tet(A) merR merT merP merC sul1 qacEdelta1 aadA2 dfrA12 |
| N16S319 | Alachua | SGI-1 | 63,305 | OK209933 | SPI-3, SPI-4 | Proteus mirabilis (93%, 100%) | KJ439039.1 | merE merD merF merP merT merR sul1 qacEdelta1 aadA1 tet(A) aph(6)-Id aph(3″)-Ib |
| F18S026 | Senftenberg | SGI-1 | 47,273 | OK209932 | SPI-3, SPI-4 | Proteus mirabilis (86%, 100%) | KJ439039.1 | merE merD merF merP merT merR sul1 qacEdelta1 aadA1 tet(A) aph(6)-Id aph(3″)-Ib aph(3′)-Ia |
| N17S834 | Senftenberg | SGI-1 | 117,891 | OK209936 | SPI-3, SPI-4 | Citrobacter koseri (66%, 89%) | CP026697.1 | merP merT merR sul1 qacEdelta1 dfrA5 tet(A) aph(6)-Id aph(3″)-Ib |
| N18S0175 | Saintpaul | SGI-1 | 29,745 | OK209938 | SPI-3, SPI-4 | Proteus mirabilis (97%, 100%) | KJ439039.1 | blaTEM–1 sul1 qacE aadA2 ant(2″)-Ia |
| F18S010 F18S014 F18S032 F18S040 F18S043 F16S144 N17S056 N17S1466 F18S030 N18S0173 | I 4,[5],12:i:- | SGI-4 | 81,780 | MN730129.1 | SPI-4, SPI-6 | Citrobacter sp. (45%, 97%) | CP056647.1 | pcoS pcoR pcoD pcoC pcoA silP silA silB silF silC silR silS silE arsC arsBarsA arsD arsR |
| N16S319 | Alachua | SGI-4 | ∼85,000 | OK209934 | SPI-4, SPI-6 | Enterobacter hormaechei (97%, 100%) | CP042551.1 | silE silS silR silC silF silB silA silP pcoA pcoB pcoC pcoD pcoR pcoS pcoE |