TABLE 2.
Putative integrated plasmids in Salmonella isolates.
| ID | Serotype | Estimated size of plasmid on chromosome | Location of insertion | AMR and HMR on inserted plasmid | Match with reference plasmid (accession No) | Plasmid types |
| F18S002 F18S010 F18S014 F18S032 F18S040 F18S043 F18S045 N16S144 N17S107 N17S380 N17S1466 N18S0173 | I 4,[5],12:i:- | 16 kb | SPI-1, SPI-9 | tet(B) merR merT merP merC sul2 aph(3″)-Ib aph(6)-Id blaTEM–1 | pHCM1 (CP029645.1) | IncQ |
| N17S146 | I 4,[5],12:i:- | 12 kb | SPI-1, SPI-9 | sul2 merC merP merT merR tet(B) | pHCM1 (CP029645.1) | IncQ |
| F18S001 | Muenster | 31.6 kb | SPI-5, SPI14 | silE silS silR silC silF silB silA silP pcoA pcoB pcoC pcoD pcoR pcoS pcoE | pF18S044-1 (ready for submission) | IncHI2 IncHI2A |
| F18S023 | Johannesburg | 31.6 kb | SPI-6, SPI14 | SilE silS silR silC silF silB silA silP pcoA pcoB pcoC pcoD pcoR pcoS pcoE | pF18S044-1 (ready for submission) | IncHI2 IncHI2A |
| N17S0834 F18S026 N18S0991 | Senftenberg | 31.6 kb | SPI-3, SPI-8 | SilE silS silR silC silF silB silA silP pcoA pcoB pcoC pcoD pcoR pcoS pcoE | pF18S044-1 (ready for submission) | IncHI2 IncHI2A |
| N18S0017 | Agona | 31.6 kb | SPI-3, SPI-8 | SilE silS silR silC silF silB silA silP pcoA pcoB pcoC pcoD pcoR pcoS pcoE | pF18S044-1 (ready for submission) | IncHI2 IncHI2A |
| F18S033 | Heidelberg | 31.6 kb | SPI-5, SPI14 | SilE silS silR silC silF silB silA silP pcoA pcoB pcoC pcoD pcoR pcoS pcoE | pF18S044-1 (ready for submission) | IncHI2 IncHI2A |
| N17S1304 N18S1602 | Schwarzengrund | 31.6 kb | SPI-3, SPI-13 | silE silS silR silC silF silB silA silP pcoA pcoB pcoC pcoD pcoR pcoS pcoE | pF18S044-1 (ready for submission) | IncHI2 IncHI2A |
| F18S034 | Derby | 77.3 kb | SPI-1, SPI-3 | SilE silS silR silC silF silB silA silP pcoA pcoB pcoC pcoD pcoR pcoS pcoE tet(A) merR merT merP bleO | pF18S029-1 (ready for submission) | IncHI2 IncHI2A |
| F18S013 | Typhimurium | 71 kb | SPI-5, SPI14 | bla CMY– 2 | pF18S007-1 (ready for submission) | IncI |
| N16S098 | Heidelberg | 71 kb | SPI-6, SPI-16 | bla CMY– 2 | pF18S007-1 (ready for submission) | IncI |
| F18S033 | Heidelberg | 54 kb | SPI-4, SPI-6 | qacEdelta1 cmlA5 ant(2″)-Ia tet(A) aph(6)-Id aph(3″)-Ib sul2 | p24358-2 (CP051360.1) | IncC |
| N18S0597 N18S1595 N18S2170 | Typhimurium | 85 kb | SPI-1, SPI-9 | terW terZ terD tet(C) aadA1 aac(3)-VIa qacEdelta1 sul1 merE merD merA merT merR silE silS silR silC silF silB silA silP | pSDC-F2_12BHI2 (MH287085.1) | IncHI2 IncHI2A |
| N18S0981 | Typhimurium | 76.4 kb | SPI-1, SPI-9 | terW terZ terD tet(C) aadA1 aac(3)-VIa qacEdelta1 sul1 merE merD merA merT merR silE silS silR silC silF silB silA silP | pSDC-F2_12BHI2 (MH287085.1) | IncHI2 IncHI2A |
| N18S0597 N17S0520 N18S0666 N18S0981 N18S2170 | Typhimurium | 107 kb | SPI-6, SPI-16 | merR tet(A) sul2 | pN18S1634-2 | IncC |
| N17S0520 N18S0666 N18S0981 N18S2170 | Typhimurium | 83.5 kb | SPI-6, SPI-16 | merR tet(A) sul2 | pN18S1634-2 | IncC |
| N18S1595 | Typhimurium | 56 kb | SPI-6, SPI-16 | merR tet(A) sul2 | pF18S004 | Unknown - not closed |
| N17S0166 | I 4,[5],12:r:- | 158 kb | SPI-1, SPI-9 | pcoS mcr-9.1 arsC aadA1 aac(3)-VIa qacEdelta sul1 | pN53053 (CP049311.1) | IncHI2 IncHI2A |
| N18S0736 | I. 4,[5],12:r:- | 38 kb | SPI-1, SPI-9 | sul1, qacEdelta1, aac(3)-VIa, aadA1, arsR | pN53053 (CP049311.1) | IncHI2 IncHI2A |
| F18S004 | Typhimurium | 21 kb | SPI-6, SPI-9 | tetW tetZ tetD | pF18S044-1 | IncHI2 IncHI2A |
| F18S013 | Typhimurium | 3.8 kb | SPI-5, SPI-14 | bla CMY– 2 | pF18S003-1/pF18S007-1/pN16S065-2 | IncC/IncI/IncB/O/K/Z |
| N16S021 N16S070 N16S089 N16S098 N16S189 N16S214 N18S0645 18S1677 N18S2188 | Typhimurium | 3.8 kb | SPI-9, SPI-12 | bla CMY– 2 | pF18S003-1/pF18S007-1/pN16S065-3 | IncC/IncI/IncB/O/K/Z |
| N18S0406 | Bredeney | 3.8 kb | SPI-3, SPI-13 | bla CMY– 2 | pF18S003-1/pF18S007-1/pN16S065-10 | IncC/IncI/IncB/O/K/Z |
| F18S049 N17S1270 N18S1943 N18S2154 | Hadar | 15.0–19.3 kb | SPI-2, SPI-12 | aph(3″)-Ib aph(6)-Id tet(A) | pH1038-142(KJ484634.1) | IncN IncFII |
| N18S2042 | Infantis | 91 kb | SPI-2, SPI-12 | tet(A) merR merT merP merC bla CTX–M– 65 | pN16S024 (CP052840.1) | IncHI2 |