Table 4.
Statistics for trees based on individual genes. MLST refers to the conventional MLST approach employing six loci to type C. glabrata and PLOI refers to the approach proposed in this study. The resolution of each approach and locus is evaluated by three factors, namely precision, recall, and F1. The higher the overall score, the more resolutive is the approach/locus.
| Loci | Approach | Precision | Recall | F1 |
|---|---|---|---|---|
| FKS1 | MLST | 0.96 | 0.87 | 0.88 |
| LEU2 | MLST | 0.87 | 0.75 | 0.74 |
| NMT1 | MLST | 0.93 | 0.93 | 0.93 |
| TRP1 | MLST | 0.96 | 0.81 | 0.83 |
| UGP1 | MLST | 0.79 | 0.85 | 0.77 |
| URA3 | MLST | 0.92 | 0.78 | 0.79 |
| A02255 | PLOI | 0.95 | 0.83 | 0.85 |
| DUF1 | PLOI | 0.88 | 0.87 | 0.84 |
| G00715 | PLOI | 0.83 | 0.91 | 0.86 |
| G00825 | PLOI | 0.99 | 1.0 | 0.99 |
| G03839 | PLOI | 0.92 | 0.82 | 0.82 |
| G06281 | PLOI | 0.92 | 0.81 | 0.82 |
| H09053 | PLOI | 0.92 | 0.81 | 0.83 |
| HKR1 | PLOI | 0.97 | 0.90 | 0.91 |
| PIR1 | PLOI | 0.90 | 0.86 | 0.85 |
| PIR2 | PLOI | 0.94 | 0.88 | 0.90 |
| SLG1 | PLOI | 0.99 | 1.0 | 0.99 |
| SSR1 | PLOI | 0.96 | 0.95 | 0.95 |
| USA1 | PLOI | 0.90 | 0.93 | 0.90 |
PLOI: Polymorphic loci of interest.