TABLE 3.
Summary of mobile genetic elements in the complete genomes of the ten Yersinia ruckeri strains.
| Insertion sequences* |
Intact phages in the chromosome (number, GC content%)** |
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| Strain number | IS1 | IS200/IS605 | IS256 | IS3 | IS481 | IS5 | ISL3 | new | Total number | Percentage | GF_2 NC_026611 | SfI NC_027339 | SfV NC_003444 | ENT90 NC_019932 | 500465_1 NC_049342 | SuMu NC_019455 | 118970_sal3 NC_031940 | SEN34 NC_028699 | PY54 NC_005069 | Length of predicted phages |
| 16Y0180 | 3 | 1 | 21 | 25 | 0.94 | 1 (49.8%) | 1 (46.2%) | 33.4- and 35.4-kb | ||||||||||||
| 17Y0153 | 3 | 1 | 18 | 1 | 23 | 0.84 | 1 (49.8%) | 1 (47.1%) | 33.3- and 66.5-kb | |||||||||||
| 17Y0155 | 3 | 18 | 21 | 0.79 | 1 (49.8%) | 1 (47.8%) | 33.4- and 51-kb | |||||||||||||
| 17Y0157 | 1 | 3 | 1 | 11 | 16 | 0.56 | ||||||||||||||
| 17Y0159 | 1 | 5 | 12 | 1 | 5 | 24 | 0.85 | 1 (45.1%) | 1 (49.2%) | 1 (47.2%) | 53. 5-, 43. 4-, and 38.9-kb | |||||||||
| 17Y0161 | 2 | 9 | 1 | 12 | 0.46 | 1 (49.2%) | 1 (47.8%) | 47.9- and 46.4-kb | ||||||||||||
| 17Y0163 | 3 | 6 | 9 | 0.35 | 1 (48.8%) | 1 (48.7%) | 45.9- and 30.8-kb | |||||||||||||
| 17Y0189 | 3 | 18 | 21 | 0.79 | 2 (47.1 and 49.8%) | 51- and 33.3-kb | ||||||||||||||
| 17Y0412 | 3 | 1 | 14 | 1 | 19 | 0.7 | 1 (47.3%) | 1 (48.9%) | 1 (48.5%) | 1 (48.5%) | 35. 6-, 41. 9-, 44. 9-, and 50.1-kb | |||||||||
| 17Y0414 | 3 | 1 | 14 | 18 | 0.64 | 1 (47.4%) | 1 (48.5%) | 1 (48.5%) | 34. 1-, 44. 9-, and 50.1-kb | |||||||||||
*Only complete insertion sequences are reported. **PHASTER completeness score 100–150.