Table 5.
Genome-widea and suggestive significant SNPs associated with animal resilience to temperature change in hot weather and lifetime milk yield
| Phenotype | Chr | SNP | Position (bp) | MAF | Beta coefficient (SE) | P-value |
|---|---|---|---|---|---|---|
| Resilience to hot weather | 5 | OAR5_38936884.1 | 35176238 | 0.32 | − 0.005 (0.001) | 1.15E−06 |
| OAR5_40288441.1 | 36496751 | 0.45 | − 0.004 (0.001) | 9.92E−06 | ||
| OAR5_41355579.1 | 37587760 | 0.34 | − 0.004 (0.001) | 1.17E−05 | ||
| s46299.1 | 36569778 | 0.32 | − 0.004 (0.001) | 1.20E−05 | ||
| OAR5_40166532_X.1 | 36373243 | 0.46 | − 0.004 (0.001) | 1.98E−05 | ||
| 19 | s14444.1 | 18983777 | 0.12 | 0.007 (0.002) | 1.85E−05 | |
| Lifetime milk yield | 19 | s14444.1a | 18983777 | 0.12 | − 141.249 (28.432) | 9.17E−07 |
Chr chromosome, MAF minor allele frequency, Beta coefficient substitution effect, σ2A(SNP) proportion of additive genetic variance attributed to detected SNPs
a: additive genetic effect and d: dominance effect (significantly different from zero (P < 0.05) are indicated with double asterisk); SE: standard error
The respective chromosomal locations refer to the Oar v4.0 genome assembly