Table 1.
Entry | Sequencea,b,c | T m versus DNA [°C] | ΔTm/mod [°C] | T m versus RNA [°C] | ΔTm/mod [°C] |
---|---|---|---|---|---|
ON1 | 5′-d(GGA TGT TCt CGA)-3′ | 40.0 | -9.1 | 42.6 | -6.8 |
ON2 | 5′-d(GGA t GT TCT CGA)-3′ | 43.0 | -6.1 | 45.8 | -3.6 |
ON3 | 5′-d(GGA tGT TCt CGA)-3′ | 32.8 | -8.1 | 38.0 | -5.7 |
ON4 | 5′-d(GGA TGt tCT CGA)-3′ | 42.9 | -3.1 | 47.0 | -1.2 |
ON5 | 5′-d(GCA ttt ttA CCG)-3′d | 34.0 | -2.7 | 37.2 | -1.4 |
aTotal strand conc. 2 μM in 10 mM NaH2PO4, 150 mM NaCl, pH 7.0.
bA, G, T, C denote natural 2‘-deoxynucleosides; t corresponds to modified nucleosides.
c T m of unmodified duplexes, DNA/DNA: 49.1°C, DNA/RNA: 49.4°C, RNA/RNA: 60.3°C.
d T m of unmodified duplexes, DNA/DNA: 47.5°C, DNA/RNA: 44.0°C.