Table 3.
T m values from UV-melting curves (260 nm) of ON7-8 and Tc1 in duplex with ON6.
Entry | Sequencea,b | NaCl concentration [mM] | ΔTm versus ON6c [°C] |
---|---|---|---|
ON7 | 5’-d(cct aca aga gct)-7′ | 150 | 83.6 |
ON7 | 5′-d(cct aca aga gct)-7′ | 50 | 79.6 |
ON7 | 5′-d(cct aca aga gct)-7′ | 0 | 68.6 |
ON8 | 5′-d(tcg aga aca tcc)-7′ | 150 | <10 |
Tc1 | 5′-d(tcg agaacatcc)-3′ | 150 | 81.0 |
aTotal strand conc. 2μM in 10 mM NaH2PO4, pH 7.0.
b a, g, t, c corresponds to modified adenine, guanine, thymine and methylcytosine, respectively, a, g, t, c corresponds to tricyclo-DNA adenine, guanine, thymine and methylcytosine, respectively.
c ON6 sequence: 5′-d(agc tct tgt agg)-7′.