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. 2021 Nov 18;42(6):834–844. doi: 10.24272/j.issn.2095-8137.2021.334

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Editorial Office of Zoological Research, Kunming Institute of Zoology, Chinese Academy of Sciences

This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Recombination analysis of the pangolin-CoV-GXC sublineage

A: Similarity plot comparing 21 viruses related to MP20 from successfully captured coding sequences (CDSs). ^*: Region for which a recombination signal was detected. SC2r-CoVs are displayed in warm colors, and SARSr-CoVs are displayed in cool colors. B: Similarity plot comparing 20 viruses related to the pangolin-CoV GXP5L. ^*: Region for which a recombination signal was detected. C, D: Neighboring-joining phylogenetic trees for regions with a recombination signal based on all positions (C) and based on only the third positions (D) in the codons. The bootstrap values calculated from 1000 replicates and branch scale bars are shown.