Abstract
A series of novel biaryl amide derivatives were synthesized and evaluated for anti-HCV virus activity. Some significant SARs were uncovered. The intensive structural modifications led to fifteen novel compounds with more potent inhibitory activity compared to the hit compounds IMB 26 and IMB1f. Among them, compound 80 was the most active, with EC50 values almost equivalent to the clinical drug telaprevir (EC50 = 15 nM). Furthermore, it also had a good safety and in vitro and oral pharmacokinetic (oral bioavailability in rats: 34%) profile, suggesting a highly drug-like nature. Compound 80represents a more promising scaffold for anti-HCV virus activity for further study.
Keywords: HCV, Biaryl amide, Structure-activity relationship, Pharmacokinetics, Nitro group, hA3G
Graphical abstract
1. Introduction
Hepatitis C virus (HCV) infection seriously threatens global health, with approximately 170 million individuals infected and causing up to 350,000 related deaths per year worldwide [1,2]. HCV infection is an insidious disease, and the early stages of infection are largely asymptomatic such that most are unaware of their infection. HCV-infected people are at high risk for developing chronic liver disease, cirrhosis, and hepatocellular carcinoma [3]. As many as 50–80% of patients newly infected with HCV develop chronic infection; of those chronically infected individuals, approximately 30% progress to liver cirrhosis, and up to 4% will go on to develop life-threatening hepatocellular carcinoma and end-stage liver disease [2,4]. The combination of pegylatedinterferon (PEG-IFN) with ribavirin is the conventional treatment for HCV infection, which requires 24–48 weeks and causes frequent, sometimes severe, side effects. Moreover, the regimen is only effective in the range of one half to two-thirds of persons treated, depending on clinical stage and genotype [5]. The recent approval of several small-molecule direct-acting antiviral (DAA) therapies for HCV infection has dramatically improved the standard of care for HCV. These drugs target viral proteins (NS3/4 A protease, NS5B polymerase, and NS5A) involved in the replication stage of HCV infection [6]. For example, Epclusa: a combination of sofosbuvir (a nucleotide analog inhibitor of HCV NS5B polymerase) with velpatasvir (NS5A inhibitor), is the backbone of the first oral, pangenotype, single-tablet regimen for the treatment of adults with genotype 1–6 chronic HCV infection [7]. Two newly approved combination hepatitis C drugs (Zepatier: elbasvir + grazoprevir and Viekira and PaK: ombitasvir + paritaprevir + ritonavir + dasabuvir) have demonstrated improved safety and efficacy for treating genotype 1 or 4 HCV-infected persons [8]. Although these treatments offer renewed hope toward curing HCV infection, the issues of drug resistance, narrow genotype specificity, lack of vaccines, and high cost remain [[9], [10], [11], [12]]. It is still imperative to develop new anti-HCV agents, especially those with novel mechanisms of action (MOAs) and new molecular structures.
Many compounds with biaryl amide moieties have been studied continuously because of their diverse roles in biological functions and diseases, such as viral infection [13], bacterial infection [14], diabetes [15], spinal muscular atrophy [16], human African trypanosomiasis [17] and cancers [[18], [19], [20], [21], [22]]. As shown in Fig. 1 , ML336 was found to inhibit potently several Venezuelan equine encephalitis viruses in the low nanomolar range without cytotoxicity [13]. Compound 2 was found to have antibiofilm activity as an adjuvant that enhances the susceptibility of drug-resistant strains of bacteria, such as Acinetobacter baumannii and Pseudomonas aeruginosa, to meropenem [14]. Compound 3 showed potent activity in ex vivo diabetic retinopathy models as a new class of selective Rho kinase inhibitors [15]. SCYX-7158 was used to treat human African trypanosomiasis(HAT) and has begun human clinical trials [17]. Compounds 5–9 show effective anticancer activities. Compound 5inhibited autotoxin-dependent invasion of A2058 human melanoma cells in vitro and reduced B16 melanoma metastasis in vivo [18]. Compound 8 was found to be an efficacious RAF protein inhibitor targeting RAS mutant cancer [21]. Compound 9 (Ponatinib) is an orally active multitargeted kinase inhibitor and has been approved to treat chronic myeloid leukemia by the FDA [22].
Fig. 1.
Representative biaryl amide derivatives.
Human APOBEC3G (apolipoprotein B messenger RNA [mRNA]-editing enzyme catalytic polypeptide-like 3G, hA3G) is a cytidine deaminase and belongs to the APOBEC superfamily. Accumulated evidence shows that hA3G in human T lymphocytes represents an innate immunity factor that displays broad-spectrum antiviral activity, including inhibiting human immunodeficiency virus type 1(HIV-1) [[23], [24], [25], [26]], hepatitis B virus (HBV) [27], HCV [28,29], paramyxovirus [30], enterovirus 71(EV71) [31,32], and T-cell leukemia virus type 1(HTLV-1) [33]. In continuation of our research on antiviral drugs, some biaryl amid ederivatives were found to display significant anti-HIV-1, anti-HCV, and anti-EV17 activities (Fig. 2 ). An antiviral mechanism study demonstrated that IMB-26, as an hA3G stabilizer, directly binds to the hA3G protein and infectively protects hA3G from Vif-mediated degradation and inhibits HIV-1 viral replication [23]. IMB-1f, as an analog of IMB-26, inhibited hepatitis C virus replication [29,31]. IMB-Z was found to increase hA3G encapsidation into EV17 progeny virion particles and to inhibit EV17 replication [32]. In addition, Young et al. reported that biaryl amide derivative 10, as a small molecule inhibitor of microRNA miR-122, can reduce HCV RNA levels [34]. Since these biaryl amide derivatives target host innate components (hA3G is an innate immunity factor, and microRNA miR-122 is a human liver-specific miRNA), the virus will most likely not be able to develop resistance to these molecules. Therefore, biaryl amide derivatives could be a new class of broad spectrum antiviral agents that merit exploration.
Fig. 2.
Indicated structural modifications of IMB-26.
Here, we synthesized a series of new N-aryl benzamide analogs by changing R1, R2, and R3(Fig. 2) and evaluated their ability to inhibit hepatitis C virus replication in acutely infected Huh7.5 cells. The medicinal chemistry effort led to the discovery of more potent new lead compounds of anti-HCV 68, 78, and 80, which exhibited strong anti-HCV activity comparable to the clinical drug VX950 (EC50 = 0.015–0.083 μM). More importantly, a novel pharmacophore of N-aryl-(3-nitro-4-alkoxy)benzamide against HCV infection was revealed by structure-activity relationship (SAR) analysis. The physicochemical and ADME properties of compound 80 were evaluated. The primary study of some compounds inhibiting Vif-mediated hA3G degradation progressed.
2. Results and discussion
2.1. Chemistry
The synthesis of compounds 13 (IMB-1f) and 14 was performed according to a previously reported method (Scheme 1 ) [31]. Hydrogenation of the nitro group followed by amide coupling reaction with propanoyl chloride furnished compounds13 and 14, respectively. Compounds 16–20 were obtained by amide coupling reaction between various substituted anilines and benzoic acid derivative 15, which was obtained by a selective amide coupling reaction between 4-methoxy-3-aminobenzoic acid and propanoyl chloride.
Scheme 1.
Synthesis of compounds14 and 16–20. Reagents and conditions: (i) various substituted anilines, EDCI, DMAP, CH2Cl2, rt, 8 h; (ii) a. H2 (30 psi), Pd/C, MeOH/EtOAc (1:1), rt, 2 h; b. propanoyl chloride, Et3N,CH2Cl2, 0 °C–rt, 3–5 h.
Compounds 22–35 were obtained as depicted in Scheme 2 . 4-hydroxy-3-nitrobenzoic acid acted as a starting compound through an amide coupling reaction with 4-methoxy aniline to afford intermediate 21, which was reacted with various desired alkyl bromides by nucleophilic substitution to afford corresponding nitro intermediates 22–25. Hydrogenation of the nitro group offered corresponding amino derivatives 29–32, which were then reacted with propanoyl chloride to give final products 36–39. Compound 25 was reacted with various secondary amines in the presence of potassium carbonate to afford corresponding nitro compounds 26–28. Hydrogenation of the nitro group offered corresponding amino intermediates 33–35, which were reacted with propanoyl chloride to give final products 40–42.
Scheme 2.
Synthesis of compounds 36–42. Reagents and conditions: (i) a. 4-methoxy anilines, EDCI, DMAP, CH2Cl2, rt, 6 h. (ii) a. various alkyl alcohols, PPh3, DEAD,THF,0 °C–rt, 10 h (afforded corresponding compounds 22–25); b. secondary amines, K2CO3, DMF, 60 °C, 4 h (afforded corresponding compounds 26–28 from compound 25). (iii) H2 (30 psi), Pd/C, MeOH/EtOAc (1:1), rt, 1.5–3 h(iv)propanoyl chloride, Et3N,CH2Cl2, 0 °C–rt, 3 h.
Compound 45 was synthesized through a 4-step reaction, including two amide coupling reactions, an intramolecular nucleophilic substitution, and a hydrolysis reaction. Using methyl 3,4-dihydro-2H-benzo [1,4]oxazine-6-carboxylate as the starting compound, compound 48 was synthesized through hydrolysis reactions and an amide coupling reaction (Scheme 3 ).
Scheme 3.
Synthesis of compounds 45 and 48. Reagents and conditions: (i) 2-bromoacetyl bromide, NaHCO3, EtOAc/H2O (1:1), rt, 12 h. (ii) K2CO3, DMF, 80 °C, 3 h (iii) a. NaOH, H2O/MeOH (1:2), reflux, 3 h; b. 4-methoxyaniline, EDCI, DMAP, CH2Cl2, rt, 6 h. (iv) Boc2O, DMAP, CH3CN, rt. (v) 30% CF3CO2H in CH2Cl2, 0 °C–rt, 3 h.
Compounds 50–57 were obtained as depicted in Scheme 4 . Starting from methyl 4-hydroxy-3-nitrobenzoate, a nucleophilic substitution reaction with 2-bromo propane and subsequent hydrolysis reaction under basic conditions afforded 49, which was coupled with substituted anilines to afford corresponding nitro compounds 50 and 51. Reduction of the nitro group with palladium-catalyzed hydrogenation offered corresponding amino derivatives 52 and 53. Compounds 52 and 53 were reacted with propanoyl chloride or 2-bromo propanoyl chloride in the presence of Et3N to give products 54, 56, 55, and 57, respectively.
Scheme 4.
Synthesis of compounds 50–57. Reagents and conditions: (i) a. 2-Bromo propane, K2CO3, NaI, DMF, 65 °C, 5 h; b. LiOH, MeOH/THF (1:1), 0 °C, 1 h. (ii) substituted anilines, EDCI, DMAP, CH2Cl2, rt, 6 h; (iii) H2 (30 psi), Pd/C, MeOH/EtOAc (1:1), rt, 2 h; (iv) propanoyl chloride or 2-bromopropanoyl chloride, Et3N,CH2Cl2, 0 °C–rt, 3 h.
Compounds 60–70 were obtained according to the synthetic route depicted in Scheme 5 . Starting from various R2-substituted methyl 4-hydroxy benzoate analogs 58a–e, a nucleophilic substituted reaction with 1-bromo-3-chloropropane and subsequent hydrolysis reaction yielded the corresponding benzoic acid derivatives 59a–e. Compounds 59a–e were coupled with 3-trifluoromethyl-4-(4-methylpiperazin-1-yl)-aniline in the presence of EDCI and DMAP to afford the corresponding amide derivatives 60–64. Reduction of the nitro compound 60 via palladium-catalyzed hydrogenation offered the corresponding amino product 65, which was reacted with propanoyl chloride to give the desired product 66. Compound 58a was reacted with different brominated alkanes and subsequently hydrolyzed to give intermediates 67a–c, which were coupled with 3-trifluoromethyl-4-(4-methylpiperazin-1-yl)-aniline to give compounds 68–70.
Scheme 5.
Synthesis of compounds 60–70. Reagents and conditions: (i) a. 1-bromo-3-chloropropane (1-bromo-2-chloroethane for 67a;1-bromo-4-chlorobutane for 67b;1-bromo-5-chloropentane for 67c), K2CO3, NaI, DMF, 65 °C, 5 h; b. LiOH, MeOH/THF (1:1), 0 °C, 1 h. (ii) 3-trifluoromethyl-4-(4-methylpiperazin-1-yl)-aniline, EDCI, DMAP, CH2Cl2, rt, 6 h (iii) H2 (30 psi), Pd/C, MeOH/EtOAc (1:1), rt, 3 h. (iv) Propanoyl chloride, Et3N,CH2Cl2, 0 °C–rt, 3 h.
Compounds 71–80 were prepared as described above through an amide coupling reaction between compound 59a or 67a and various substituted anilines (Scheme 6 ). The substituted anilines 83a–f, 86, and 88 that were not commercially available were readily synthesized by a short three-step sequence (Scheme 7 ). Briefly, the bromination of 2-trifluoromethyl-4-nitrotoluene with N-bromosuccinimide followed by a nucleophilic substituted reaction with various appropriate second amines gave nitro derivatives 82a–f, which were hydrogenated by palladium-catalyzed hydrogenation reduction to afford corresponding amino derivatives 83a–f. Compound 88 was synthesized by a nucleophilic substituted reaction followed by a reduction of the nitro group.
Scheme 6.
Synthesis of compounds 71–80. Reagents and conditions: (i) a. various substituted anilines, EDCI, DMAP, CH2Cl2, rt, 6 h; b. LiOH, MeOH/THF, 0 °C–rt, for compound 39.
Scheme 7.
Synthesis of compounds 83a–f, 86, and 88. Reagents and conditions: (i) NBS, AIBN, CH2Cl2, reflux for 12 h; (ii) substituted second amine, K2CO3, NaI, DMF, 65 °C, 5 h; (iii) H2 (14–30 psi), Pd/C, MeOH/EtOAc (1:1), rt, 3–24 h.
2.2. SAR analysis for anti-HCV activity in vitro
All analogs were screened for inhibition of HCV RNA replication in Huh7.5 cells infected with virus J6/JFH/JC-1(recombinant HCV genotype 2a). In the HCVcc (a cell culture system for HCV) system, Huh7.5 cells were infected with HCV vital stock (45 IU/cell) and treated simultaneously with test compounds or the positive control telaprevir (VX-950) and simeprevir (SIM). Total intracellular HCV RNA was extracted and quantified with one-step qRT-PCR. The cytotoxicity was determined using MTT assay. The EC50 and CC50 values were calculated with the Reed and Muench method.
Among the 43 novel synthesized compounds summarized in Table 1 –4, twenty-three compounds showed higher potent activity against HCV than IMB-1f (IC50: <1.31 μM). Six compounds showed strong anti-HCV activities (IC50: 0.015–0.083 μM) and high selectivity indices (SI: 113–431). Compound 80 showed the highest activity comparable to the positive control VX-950 (80: EC50 = 0.015 μM vs. VX-950: EC50 = 0.022 μM). Most compounds displayed suitable values of physicochemical parameters, such as the calculated LogP (cLogP < 5) and topological polar surface area (tPSA between 50 and 100 Å), and could have good bioavailability and drug-like features [35,36].
Table 1.
SAR exploration focused on the R1 moieties.
| Compd. | Structure of R1 | CC50(μM) | EC50(μM) | SI | ClogP | tPSA |
|---|---|---|---|---|---|---|
| IMB 26 | ![]() |
15 ± 1.1 | 2.1 ± 0.40 | 7 | 2.72 | 95.1 |
| 13 (IMB-1f) | ![]() |
109 ± 3.5 | 1.30 ± 0.24 | 84 | 2.01 | 76.7 |
| 14 | ![]() |
171 | 2.56 ± 1.24 | 66 | 2.13 | 70.7 |
| 16 | ![]() |
>200 | >22.2 | / | 1.86 | 73.9 |
| 17 | ![]() |
>200 | >22.2 | / | 2.15 | 73.9 |
| 18 | ![]() |
35.3 ± 2.4 | 1.48 ± 0.72 | 24 | 3.46 | 73.9 |
| 19 | ![]() |
65.6 ± 4.6 | 7.41 ± 2.03 | 9 | 5.38 | 79.5 |
| 20 | ![]() |
>200 | 14.4 | >14 | −0.32 | 95.4 |
| VX-950 | 23.7 ± 7.4 | 0.022 ± 0.008 | 1078 | 2.75 | 179.5 | |
| SIM | 38.04 ± 4.02 | 0.008 ± 0.006 | 4755 | / | / |

As shown in Fig. 2, the structural elements of R1, R2, and R3 were first investigated during the SAR study. In a previous report, 4-OCH3 in the A ring was considered to be important for antiviral activity, and replacement of the α-bromocarbonyl group with a propionyl group led to lower cytotoxicity [29,31]. Therefore, we first fixed R2 as a propionamino group and R3 as a methyl group and varied the R1 moiety. Compounds 14 and 16–20 were synthesized to probe the effect of R1 moieties on anti-HCV activity. As shown in Table 1, compound 18 with a 4-(4-methylpiperazin-1-yl)-methyl-3-trifluoromethyl-phenyl group, which is an important part of ponatinib, a clinical antitumor drug with multitargeted tyrosine-kinase inhibition, exhibited definitive anti-HCV activity similar to the reported compounds, IMB-26 and 13 (IMB-1f), with selectively index (SI) values higher than 20 and EC50 values lower than 1.5 μM. Compounds 14, 19, and 20 showed rather modest anti-HCV activity, but IS values were higher than those of IMB-26. Compounds 16 and 17 completely lost their antiviral activity. The SAR data pointed to the choice of the R1 moieties being crucial for high potency, which was not limited to lipophilic or hydrophilic groups but would need suitable volume and polarity distributions.
As compound 13 had a high SI value, we fixed R1 as a 4-methoxy phenyl group and R2 as a propionamino group and varied the R3 moiety to synthesize compounds 36–42 (Table 2 ). Replacing the methyl group in the R3 moiety with ethyl or propanyl groups, as shown in compounds 36 and 37, slightly decreased anti-HCV activities. Compound 38 with isopropyl substitution displayed higher anti-HCV activity and SI value than IMB-26 and compound 13. Introduction of the 3-chloro group in compound 37, as shown in compound 39, retained partial antiviral activities. Installation of bimethylamino, 4-methyl piperizin-1-yl, or morpholinyl hydrophilic moieties on the head of R3 (40, 41, and 42) resulted in significant activity loss. Cyclizing R2 and R3 moieties gave compounds 45 and 48. Compound 45 retained partial antiviral activities, while 48 lost activity. The above results showed that the R3 position may be lipophilic required for anti-HCV activity, and the isopropyl moiety is the most advantageous group, as shown in Table 2.
Table 2.
SAR exploration focused on the R3 Moieties.
| Compd. | Structure of R3 | CC50(μM) | EC50(μM) | SI | ClogP | tPSA |
|---|---|---|---|---|---|---|
| 36 | ![]() |
73.15 ± 4.91 | 1.47 ± 0.23 | 48 | 2.54 | 76.6 |
| 37 | ![]() |
106.2 | 1.55 ± 0.53 | 68 | 3.07 | 76.6 |
| 38 | ![]() |
112.7 ± 21.4 | 1.10 ± 0.40 | 103 | 2.85 | 76.6 |
| 39 | ![]() |
158.2 | 7.41 ± 1.31 | 21 | 3.80 | 76.6 |
| 40 | ![]() |
153.78 | >22.2 | / | 2.46 | 79.9 |
| 41 | ![]() |
126.5 | 13.47 | 9.4 | 1.51 | 83.1 |
| 42 | ![]() |
49.18 ± 7.84 | >22.2 | / | 2.44 | 89.1 |
| 45 | 77.31 ± 2.10 | 7.46 ± 1.40 | 10 | 1.71 | 76.7 | |
| 48 | 152.8 | >22.2 | 2.53 | 59.6 |

Next, we investigated the importance of the R2 moiety for anti-HCV activity. As shown in Table 3 , because intermediates 12 and 24–26 with nitro groups in the R2 position showed modest inhibitory activity against HCV with EC50 values in the range of 2.39–8.96 μM, we synthesized two series of compounds (50–53 and 54–57) with four different R2 moieties and intensively investigated the relationship between R2 moieties and anti-HCV activity. In the two series of compounds, compounds 50 and 54 with nitro groups displayed the most dominant anti-HCV activity (EC50 = 0.095 and 3.10 μM, respectively) in the four kinds of substituent derivatives, and the corresponding reduction products 51 and 55 showed the weakest activity. Compounds 52, 53, 56, and 57 with amide groups in the R2 moiety showed moderate inhibitory activity. Compounds 53 and 57 with α-bromo propionyl groups displayed higher cytotoxicity than compounds 52 and 56 with propionyl groups, which was consistent with previous results [29]. Notably, compounds 54–57 exhibited higher potent activity than IMB 26 and compound 13 with EC50 values in the range of 0.09–1.32 μM, which means that the 4-(4-methylpiperazin-1-yl)-methyl-3-trifluoromethyl-phenyl group may be more dominant than the 4-methoxy phenyl group in the anti-HCV activity. Compound 25 with a 3-chloropropyl group at the R3 position exhibited similar antiviral activity to compound 24 with an isopropyl group but possessed lower cytotoxicity. To obtain analogs with various structures and good solubility, compound 60 was synthesized. Compound 60 not only unexpectedly displayed the highest inhibitory activity (EC50 = 0.044 μM) but also exhibited the highest SI value (SI = 154) among the above target compounds. Replacing the nitro group (60) with a fluoro (61), chloro (62) trifluoromethyl (63) or sulfamoyl group (64) deteriorated the anti-HCV activity. Replacing the nitro group (60) with an amino or amido group (65 and 66) decreased the activity, which is consistent with the above two series of compounds 50–53 and 54–57. These data indicate that the nitro group in the R2 fragment would be an advantage in the anti-HCV activity of these compounds. Decreasing the tether length by one –CH3 group in the R3 fragment (68) retained similar activity as compound 60. Increasing the tether length by one or two –CH3 groups in the R3 fragment (69 and 70, respectively) did not improve the potency but rather the cell toxicity.
Table 3.
SAR exploration focused on the R1, R2, and R3 moieties.
| Compd. | Structure |
CC50(μM) | EC50(μM) | SI | ClogP | tPSA | ||
|---|---|---|---|---|---|---|---|---|
| R1 | R2 | R3 | ||||||
| 12 | ![]() |
NO2 | Me | 88.2 ± 1.6 | 4.07 ± 1.63 | 22 | 2.82 | 93.4 |
| 24 | ![]() |
![]() |
23.4 ± 2.8 | 2.86 ± 1.80 | 8 | 3.44 | 99.4 | |
| 25 | ![]() |
39.7 ± 7.4 | 2.39 ± 2.08 | 17 | 3.52 | 99.4 | ||
| 26 | ![]() |
126.5 ± 9.6 | 8.96 ± 3.57 | 14 | 3.05 | 102.6 | ||
| 50 | ![]() |
![]() |
50.0 ± 18.4 | 3.10 ± 0.17 | 16 | 3.66 | 93.4 | |
| 51 | NH2 | 72.1 ± 9.2 | 7.41 ± 2.23 | 10 | 2.99 | 67.6 | ||
| 52 | NHCOCH2CH3 | 80.6 ± 20.7 | 6.03 ± 1.74 | 13 | 2.96 | 70.7 | ||
| 53 | NHCOCHBrCH3 | 7.9 ± 0.9 | 4.34 ± 0.86 | 2 | 3.72 | 70.7 | ||
| 54 | ![]() |
NO2 | 3.5 ± 0.3 | 0.095 ± 0.021 | 39 | 4.70 | 96.6 | |
| 55 | NH2 | 21.6 ± 2.3 | 1.32 ± 0.22 | 16 | 4.32 | 70.8 | ||
| 56 | NHCOCH2CH3 | 15.3 ± 0.7 | 0.30 ± 0.04 | 51 | 4.30 | 73.9 | ||
| 57 | NHCOCHBrCH3 | 8.7 ± 1.2 | 0.32 ± 0.04 | 27 | 5.05 | 73.9 | ||
| 60 | NO2 | ![]() |
6.8 ± 0.07 | 0.044 ± 0.014 | 154 | 4.91 | 96.6 | |
| 61 | F | 8.8 ± 1.2 | 0.49 ± 0.25 | 18.9 | 5.33 | 44.8 | ||
| 62 | Cl | 4.1 ± 1.3 | 0.58 ± 0.35 | 7.0 | 5.89 | 44.8 | ||
| 63 | CF3 | 13.4 ± 0.97 | 0.13 ± 0.02 | 99.6 | 6.28 | 44.8 | ||
| 64 | SO2NH2 | 5.47 ± 2.92 | 1.14 ± 0.56 | 6.2 | 3.31 | 104.9 | ||
| 65 | NH2 | 12.9 ± 1.75 | 1.18 ± 0.53 | 10.9 | 4.52 | 70.8 | ||
| 66 | NHCOCH2CH3 | 7.87 ± 0.54 | 0.22 ± 0.18 | 36.3 | 4.38 | 73.9 | ||
| 68 | NO2 | ![]() |
9.04 ± 2.02 | 0.044 ± 0.002 | 204 | 4.58 | 96.6 | |
| 69 | ![]() |
3.74 ± 0.61 | 0.100 ± 0.095 | 37 | 5.28 | 96.6 | ||
| 70 | 2.14 ± 0.65 | 0.060 ± 0.011 | 36 | 5.81 | 96.6 | |||
Because of the dominance of the 4-(4-methylpiperazin-1-yl)-methyl-3-trifluoromethyl-phenyl group in the anti-HCV activity, novel analogs 71–79 were synthesized to explore further the structure-activity relationship (Table 4 ). Replacing the trifluoromethyl group in the B ring with a cyano group afforded less potent activity, as shown in compounds 60 and 71. Replacing 4-methylpiperazin-1-yl with 4-(dimethylamino)piperidinyl afforded a less potent analog, as shown in compounds 60 and 72. However, the introduction of smaller substitutions, such as 4-(dimethylamino)cyclopentylamino and 3-(dimethylamino)azetidin-1-yl groups, as shown in compounds 73 and 74, restored and even increased anti-HCV activity. Replacing the N,N-dimethyl group in compound 74 with a carboxy group resulted in a distinct loss of activity (75). Introduction of morpholinyl and dimethyl-substituted morpholinyl groups, as in 76 and 77, compared to compound 60, led to 3–6-fold decreased activity. Introduction of 4-(4-methylpiperazin-1-yl)-methyl-pyridin-3-yl group, as shown in compound 78, led to dropped potency of only 2-fold (compared 78 to 60, Table 4), showing that the pyridine-3-yl moiety was tolerated in the place of 3-trifluoromethyl-phenyl. Replacing the (4-methylpiperazin-1-yl)-methyl group (78) with 4-methylpiperidinyl (79) led to 8-fold decreased potency. Compound 80 with a 3-(dimethylamino)azetidin-1-yl group in the R1 fragment and a 2-chloroethyl group in the R3 fragment displayed the highest activity (EC50 = 0.015 μM) and SI value (SI = 431) among all synthesized novel target compounds.
Table 4.
SAR exploration focused on the R1 fragments.
| Compd. | Structure |
CC50 (μM) | EC50 (μM) | SI | cLogP | tPSA | ||
|---|---|---|---|---|---|---|---|---|
| R1 | R2 | R3 | ||||||
| 71 | ![]() |
NO2 | 15.5 ± 11.1 | 0.65 ± 0.057 | 23 | 3.74 | 120.4 | |
| 72 | ![]() |
NO2 | 5.5 ± 2.5 | 0.38 ± 0.13 | 14 | 4.32 | 96.6 | |
| 73 | ![]() |
NO2 | 5.8 ± 0.77 | 0.051 ± 0.042 | 113 | 4.76 | 96.6 | |
| 74 | ![]() |
NO2 | 7.8 ± 0.57 | 0.021 ± 0.005 | 371 | 5.20 | 96.6 | |
| 75 | ![]() |
NO2 | >200 | 4.72 ± 2.49 | >42 | 2.12 | 124.7 | |
| 76 | ![]() |
NO2 | 6.1 ± 1.7 | 0.315 ± 0.380 | 19.3 | 4.34 | 102.6 | |
| 77 | ![]() |
NO2 | 2.3 ± 0.54 | 0.174 ± 0.115 | 13.3 | 5.38 | 102.6 | |
| 78 | ![]() |
NO2 | 12.6 ± 1.2 | 0.083 ± 0.029 | 151.4 | 2.90 | 103 | |
| 79 | ![]() |
NO2 | 9.2 ± 1.1 | 0.64 ± 0.377 | 14.4 | 4.50 | 99.75 | |
| 80 | ![]() |
NO2 | 6.47 ± 1.05 | 0.015 ± 0.005 | 431 | 4.87 | 96.6 | |
2.3. Safety assessment of compound 80
Because compounds 60 and 80 showed strong anti-HCV activities (EC50: 0.044 and 0.015 μM) and high selectivity indices (SI: 154 and 431), we chose compounds 60 and 80 to investigate their safety profiles. Acute toxicity tests of compounds 60 and 80 were performed in KunMing mice. Each compound was given intraperitoneally in a single-dosing experiment at 50, 100, 150, or 200 mg/kg (n = 6 per group). The mice were closely monitored for 7 days. Compound 60 displayed low safety profiles with median lethal dose (LD50) values lower than 100 mg/kg. Compound 80 demonstrated modest safety profiles with LD50 values higher than 150 mg/kg. The results suggested that compound 80 was relatively safe in vivo.
2.4. In vitro pharmacokinetic property assessments of compound 80
Compound 80 showed the highest activity among all synthesized novel compounds and low toxicity. While compound 80 has poor solubility in water (<5 μg/mL), the aqueous solubility of the corresponding hydrochloride salt was improved to 7.8 mg/mL (at pH 7.0). Thus, compound 80 was further profiled in four assays to assess in vitro drug-like properties: logD, microsomal stability, cell permeability and plasma stability (Table 5 ). Compound 80 showed decent plasma stability (t1/2, rat = 16.9 h and t1/2, human = 19.9 h), which could ensure that a high concentration of the compound reached the bloodstream. Compound 80 showed moderate permeability (0.5 < Papp < 2.5 ( × 10−6 cm/s)) and was likely an efflux transporter substrate based on Caco-2 assays. In data from HLM/RLM, it appeared that compound 80 had low to medium metabolic stability based on liver microsome assays.
Table 5.
Solubility data and ADME for Compound 80.
| Compd | logD7.4a | Solubility of hydrochloride (mg/mL) | Caco2 ABb | Caco2 ERc | T1/2 (h)d |
HLM/RLM (μL/min)/mg | ||
|---|---|---|---|---|---|---|---|---|
| rat | human | |||||||
| 80 | 3.50 | 7.8 | 1.25 | 20.73 | 16.9 | 19.9 | 65.5/81.5 | |
eHLM/RLM: Human liver microsome intrinsic clearance, in (μL/min)/mg protein (high stability, <6.5; low stability, >35); Rat liver microsome intrinsic clearance, in (μL/min)/mg protein (high stability, <15; low stability, >90).
1-octanol/buffer 7.4.
Permeability coefficient, in 10−6 cm/s; low permeability: Papp ≤0.5 ( × 10-6 cm/s); moderate permeability: 0.5 < Papp < 2.5 ( × 10−6 cm/s); high permeability: Papp ≥2.5 ( × 10-6 cm/s).
Ratio of BA/AB permeability coefficients.
Half-life in rat and human plasma.
2.5. In vivo pharmacokinetic property assessments of compound 80
Given its favorable in vitro ADME profile, the in vivo pharmacokinetics of compound 80 were evaluated in a rat (Sprague-Dawley) model after a single dose of 2 mg/kg through the intravenous (i.v.) route and 10 mg/kg via the oral route of administration (Fig. 3 ). The plasma profiles obtained from the pharmacokinetic experiments are shown in Table 6 and Fig. 3. The results indicated that compound 80 has satisfying PK properties with an oral total exposure (AUC) of 1502 ng h/mL, medium in vivo clearance (38.3 mL/min/kg), Cmax of 452 ng/mL, and moderate bioavailability of 34%. Considering that sustained exposure to PK in vivo should exceed at least several times the in vitro EC50 expected to be useful in human efficacy studies, we used 100 ng/mL, equating to 10-fold above the EC50 for HCV, as a minimum requirement efficacy concentration. At the 10 mg/kg dose, plasma concentrations remained above 100 ng/mL for over 4 h, indicating a modest stability to metabolism in vivo of this kind of compound.
Fig. 3.
Exposure curves for compound 80 following oral and i. v. dosing in rat.
Table 6.
Pharmacokinetic parameters of compound 80 in rat plasma after i.v. and p.o. administration.a.
| parameter | unit | i.v.b | p.o.c |
|---|---|---|---|
| AUC0-last | ng·h/mL | 889 ± 179 | 1502 ± 342 |
| AUC0-inf | ng·h/mL | 898 ± 184 | 1525 ± 360 |
| MRT0-last | h | 1.36 ± 0.182 | 2.95 ± 0.276 |
| MRT0-inf | h | 1.45 ± 0.211 | 3.10 ± 0.290 |
| Cmax | ng/mL | / | 452 ± 149 |
| T1/2 | h | 1.24 ± 0.101 | 1.90 ± 0.492 |
| Tlast | h | 8.00 | 12.0 |
| Tmax | h | / | 1.00 |
| Vdss | L/kg | 3.26 ± 0.426 | |
| Cl | mL/min/kg | 38.3 ± 8.89 | |
| Fd | % | 34 | |
PK parameters (mean ± SD, n = 6).
Dosed intravenously at 2 mg/kg.
Dosed orally at 10 mg/kg.
Bioavailability (%) was calculated using 100 × (AUC0-inf (p.o.) × 2 mg/kg/AUC0-inf (iv) × 10 mg/kg).
2.6. Some compounds protecting hA3G from Vif-mediated degradation
Twenty-two compounds were subjected to a preliminary screening test to identify their inhibition of Vif-mediated hA3G degradation using our previously reported assay [23]. Briefly, 293T cells were cotransfected with the expression vectors for hA3G and Vif and then treated with 20 μM test compounds and MG132, a well-known proteasome inhibitor, as a positive control. The results in Fig. 4 show that compared with that in the cells treated with DMSO, seven compounds (12, 13, 18, 19, 20, 40, and 41) were effective in inhibiting Vif-mediated hA3G degradation in this assay (>50%). Four compounds (17, 36, 37, and 45) displayed modest activity (25%–50%). Eleven compounds showed weak activity (<25%). According to the structure-action relationship, the amido group in the R2 moiety was superior in inhibiting Vif-mediated hA3G degradation, while nitro and amino groups were adverse (except compound 12). R1 and R3 moieties would be versatile and tolerant to hydrophobic or hydrophilic groups. Compounds 13 and 18 with propionyl moieties in the R2 moiety had good anti-HCV activity and simultaneously displayed potent inhibition of Vif-mediated hA3G degradation. Compound 54 with a nitro group displayed excellent anti-HCV activity but poor inhibition of Vif-mediated hA3G degradation. Since most nitro compounds displayed poor inhibition of Vif-mediated hA3G degradation, subsequent synthesized compounds were not evaluated for activity. The antiviral mechanism of these nitro compounds is still in process.
Fig. 4.
Compounds targeting the interface of the hA3G/Vif interaction.
3. Conclusion
A series of novel biaryl amide derivatives were synthesized and assayed for anti-HCV activity in vitro. Intensive structural modifications led to fifteen novel compounds with higher potent inhibitory activity than IMB 26, especially compound 80, with EC50 values almost equivalent to those of the clinical drug telaprevir. Additionally, some significant SARs were uncovered. Among the structures of the anti-HCV compounds, R1 moieties are apt to be hydrophobic moieties (for example, an aromatic nucleus) through a methylene linked to hydrophilic moieties (for example, cyclic amine), R2 moieties should be a hydrogen bond acceptor (for example, a nitro group) and R3 moieties prefer to be hydrophobic moieties as requirements for anti-HCV activity. Such SARs provided valuable implications for further lead optimizations. Compound 18 showed comparable inhibitory activity against HCV to IMB-26 and moreover displayed effective inhibitory activity against Vif-mediated hA3G degradation, although it possessed obviously different structures at the R1 position. Most compounds with nitro groups, however, displayed poor inhibition of Vif-mediated hA3G degradation. Compound 80 displayed the highest anti-HCV activity and SI value and possessed good physicochemical properties, making it a more promising scaffold for further study.
4. Experimental section
4.1. Chemistry
All reagents and solvents were purchased from commercial sources and used as obtained. All reactions were carried out in flame-dried glassware and monitored by thin layer chromatography using aluminum TLC plate 60F254D (Merck Millipore) and visualized under UV light. 1H NMR and 13C NMR spectra were recorded with a Bruker 400 or a Varian Inova 500 or 600 NMR spectrometer. Chemical shifts are reported in parts per million (ppm) and are referenced to the residual solvent peak. The following notations are used: singlet (s); doublet (d); triplet (t); quartet (q); multiplet (m); broad (br). Data are reported in the following manner: chemical shift (multiplicity, coupling constant if appropriate, integration). Signals are quoted as δ values in ppm and coupling constants (J) are reported in Hertz. Using residual protonated solvent signals as internal standard (1H: δ(CHCl3) = 7.26 ppm, δ((CH3)2SO) = 2.50 ppm, δ(CH3OH) = 3.31 ppm, δ(H2O) = 4.67 ppm; and 13C: δ(CHCl3) = 77.16 ppm, δ((CH3)2SO) = 39.52 ppm, δ(CH3OH) = 49.00 ppm). Mass spectra were recorded on Micromass Q-ToF (ESI) spectrometer. HRMS data were measured using a Thermo LTQ Orbitrap XL mass spectrometer. Flash column chromatography was conducted using silica gel (Silicycle 40–64 μM).
General Procedure A: Coupling of 4-substituted-3-nitrobenzoic acid and various substituted anilines fragment. To a mixture of 4-substituted-3-nitrobenzoic acid, substituted anilines (1.0–1.2 equiv), DMAP (0.1 equiv) in CH2Cl2 (1.5–4 mL, ca. 0.05 M) was added N-ethyl-N'-(3-dimethylaminopropyl)carbodiimide hydrochloride (2.0 equiv). The reaction was stirred at room temperature for 16 h. The reaction mixture was extracted with CH2Cl2, washed with water and dried with anhydrous Na2SO4. The solvent was removed under vacuum, and the residue was purified by silica gel flash chromatography (eluents: 10–50% THF in petroleum ether) to offer the coupled nitro product in 78–93% yield.
General Procedure B: Hydrogenation of nitro compounds. The nitro compound (0.5 mmoL) was dissolved in ethyl acetate (5 mL), and methanol (5 mL) and Pa/C (0.05 g, 10%) was added. The resulting mixture was hydrogenated at hydrogen gas pressure of 14–35 psi for 2.5–24 h. The catalyst was removed by filtration and the filtrate was concentrated under vacuo to give amino derivatives, which was used in the next step without further purification.
General procedure C: Coupling of various substituted anilines and acyl chloride. Propionyl chloride (1.0 eq) was added dropwise to a solution of substituted aniline (1.0 mmoL) and TEA (1.5 mmoL) in dichloromethane at 0 °C. The mixture was then stirred at room temperature until the starting material was completely disappeared. The reaction was quenched with water and extracted with dichloromethane. The organic layer was washed with brine, dried over Na2SO4, concentrated in vacuo, and further purified by flash chromatography on silica gel (eluents: 1–10% MeOH in dichloromethane with 0.2% NH4OH(aq)) or C-18 functionalized silica chromatography (eluents: 5–90% MeOH in deionized water with 0.5% NH4OH(aq)) to give the product.
N-(4-bimethylamino-phenyl)-3-nitro-4-methoxy-benzamide (12) 4-methoxy-3-nitrobenzoic acid (0.197 g, 1.0 mmoL) and 4-dimethylamino-aniline (0.136 g, 1.0 mmoL) were reacted according to general procedure A to afford 12 (0.280 g, yield 89%). 1H NMR (600 MHz, CDCl3) δ 8.32 (s, 1H), 8.11 (d, J = 8.4, 1H), 7.8 (br s, 1H), 7.44 (d, J = 8.4 Hz, 2H), 7.14 (d, J = 9.0 Hz, 1H), 6.71 (d, J = 9.0 Hz, 2H), 4.01 (s, 3H), 2.93 (s, 6H); 13C NMR (150 MHz, CDCl3) δ 162.8, 155.1, 148.3, 138.9, 133.4, 127.3, 126.9, 124.2, 122.3, 113.5, 112.8, 56.8, 40.7. ESI-HRMS calcd for C16H18N3O4 [M + H]+ 316.1292; found 316.1284.
4.1.1. N-(4-bimethylaminophenyl)-3-propionamido-4-methoxy-benzamide (14)
Compound 12 (0.157 g, 0.5 mmoL) was reduced according to general procedure B to afford N-(4-bimethylamino-phenyl)-3-amino-4-methoxy-benzamide, which was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 14 (0.136 g, yield 80%). 1H NMR (400 MHz, CDCl3) δ 8.87 (s, 1H), 7.80 (m, 3H), 7.49 (d, J = 8.8 Hz, 2H), 6.98 (d, J = 8.8 Hz, 1H), 6.78 (m, 2H), 3.95 (s, 3H), 2.94 (s, 6H), 2.48 (q, J = 7.6 Hz, 2H), 1.28 (t, J = 7.6 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.4, 164.9, 150.1, 148.1, 128.0, 127.8, 127.4, 124.5, 122.2, 116.9, 113.1, 110.0, 56.0, 41.0, 31.0, 9.6. ESI-HRMS calcd for C19H24N3O3 [M + H]+ 342.1812; found 342.1806.
4.1.2. 3-Propionamido-4-methoxy-benzoic acid (15)
4-methoxy-3-aminobenzoic acid (6.0 mmoL), propionyl chloride (0.58 mL, 6.6mmoL) and TEA (1.26 mL, 9.0 mmoL) were reacted according to general procedure C to afford compound 15 (1.02 g, yield 76%). 1H NMR (400 MHz, DMSO‑d 6) δ 12.59 (br s, 1H), 9.13 (s, 1H), 8.57 (s, 1H), 7.68 (dd, J = 8.8, 2.0 Hz, 1H), 7.12 (d, J = 8.8 Hz, 1H), 3.89 (s, 3H), 2.41 (q, J = 7.6 Hz, 2H), 1.06 (t, J = 7.6 Hz, 3H). LC/MS (ESI, m/z): 222.1 [M − H]+.
4.1.3. N-((4-(4-methylpiperazin-1-yl)phenyl)-3-propionamido-4-methoxy-benzamide (16)
Compound 15 (0.223 g, 1.0 mmoL) and 4-(4-methylpiperazin-1-yl)aniline (0.191 g, 1.0 mmoL) were reacted according to general procedure A to afford compound 16 (0.278 g, yield 70%). 1H NMR (400 MHz, CDCl3) δ 8.87 (s, 1H), 7.89 (br s, 1H), 7.82 (br s, 1H), 7.78 (dd, J = 8.4, 1.6, Hz, 1H), 7.52 (d, J = 7.2 Hz, 2H), 6.96 (d, J = 8.8 Hz, 1H), 6.93 (d, J = 7.6 Hz, 2H), 3.95 (s, 3H), 3.22 (m, 4H), 2.63 (m, 4H), 2.49 (q, J = 7.6 Hz, 2H), 2.38 (s, 3H), 1.27 (t, J = 7.6 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.2, 164.8, 150.0, 148.1, 130.5, 127.2, 124.5, 121.7, 116.8, 116.5, 109.9, 55.9, 55.0, 49.3, 46.0, 30.9, 9.5. LC/MS (ESI, m/z): 397.2 [M + H]+.
4.1.4. N-(4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-propionamido-4-methoxy-benzamide (17)
Compound 15 (0.223 g, 1.0 mmoL) and 4-((4-methylpiperazin-1-yl)methyl)aniline (0.205 g, 1.0 mmoL) were reacted according to general procedure A to afford compound 17 (0.298 g, yield 73%). 1H NMR (500 MHz, CDCl3) δ 8.89 (s, 1H), 7.94 (br s, 1H), 7.82 (br s, 1H), 7.78 (dd, J = 6.8, 2.0 Hz, 1H), 7.59 (dd, J = 6.8, 1.6 Hz, 2H), 7.30 (d, J = 6.4 Hz, 2H), 6.98 (d, J = 6.8 Hz, 1H), 3.95 (s, 3H), 3.48 (s, 2H), 2.47 (m, 10H), 2.29 (s, 3H), 1.27 (t, J = 6.0 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.4, 165.1, 150.3, 137.1, 134.3, 127.5, 124.7, 120.2, 117.0, 110.1, 62.6, 56.1, 55.2, 53.2, 46.1, 31.1, 9.6. ESI-HRMS calcd for C23H31N4O3 [M + H]+ 411.2391; found 411.2397.
4.1.5. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-propionamido-4-methoxy-benzamide (18)
Compound 15 (0.223 g, 1.0 mmoL) and 4-((4-methylpiperazin-1-yl)methyl)-3-(trifluoromethyl)aniline (0.273 g, 1.0 mmoL) were reacted according to general procedure A to afford compound 18 (0.358 g, yield 75%). 1H NMR (400 MHz, CDCl3) δ 8.89 (br s, 1H), 8.19 (br s, 1H), 7.91 (d, J = 2.0 Hz, 1H), 7.85 (m, 2H), 7.82 (dd, J = 8.4, 2.4 Hz, 1H), 8.00 (s, 1H), 7.73 (d, J = 8.8 Hz, 1H), 6.99 (d, J = 8.8 Hz, 1H), 3.96 (s, 3H), 3.63 (s, 2H), 2.49 (m, 10H), 2.32 (s, 3H), 1.28 (t, J = 7.2 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.5, 165.3, 150.6, 137.1, 131.3, 129.3 (q, J = 20.0 Hz), 127.4, 127.0, 125.2, 125.0, 123.4, 123.3, 117.8 (q, J = 3.9 Hz), 117.1, 110.3, 57.9, 56.1, 55.3, 53.2, 46.1, 31.1, 9.6. ESI-HRMS calcd for C23H28N4O3F3 [M + H]+ 479.2265; found 479.2267.
4.1.6. N-(4-(1H-indol-2-yl)phenyl)-3-propionamido-4-methoxy-benzamide (19)
Compound 15 (0.223 g, 1.0 mmoL) and 4-(1H-indol-2-yl)aniline (0.208 g, 1.0 mmoL) were reacted according to general procedure A to afford compound 19 (0.338 g, yield 82%). 1H NMR (400 MHz, DMSO‑d 6) δ 11.46 (br s, 1H), 10.21 (br s, 1H), 9.19 (br s, 1H), 8.56 (br s, 1H), 7.86 (m, 4H), 7.78 (d, J = 6.4 Hz, 1H), 7.51 (d, J = 6.0 Hz, 1H), 7.39 (d, J = 6.4 Hz, 1H), 7.17 (d, J = 6.8 Hz, 1H), 7.08 (t, J = 6.0 Hz, 1H), 6.99 (t, J = 6.0 Hz, 1H), 6.84 (s, 1H), 3.92 (s, 3H), 2.44 (d, J = 5.4 Hz, 2H), 1.09 (t, J = 5.4 Hz, 3H); 13C NMR (150 MHz, DMSO‑d 6) δ 163.1, 156.8, 154.8, 139.0, 133.3, 130.5, 126.6, 124.2, 122.4, 114.3, 114.2, 71.4, 55.4, 22.2, 10.3. ESI-HRMS calcd for C25H24N3O3 [M + H]+ 414.1812; found 414.1805.
4.1.7. N-(3-mercapto-5-methyl-4H-1,2,4-triazol-4-yl)-3-propionamido-4-methoxy-benzamide (20)
Compound 15 (0.223 g, 1.0 mmoL) and 4-amino-5-methyl-4H-1,2,4-triazole-3-thiol (0.130 g, 1.0 mmoL) were reacted according to general procedure A to afford compound 20 (0.216 g, yield 65%). 1H NMR (500 MHz, CDCl3) δ 8.97 (br s, 1H), 7.74 (s, 2H), 6.96 (d, J = 7.5 Hz, 1H), 4.64 (br s, 2H), 3.97 (s, 3H), 2.45 (s, 3H), 2.43 (d, J = 6.0 Hz, 2H), 1.24 (t, J = 6.0 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.0, 169.6, 165.4, 151.9, 149.5, 128.0, 127.4, 124.2, 122.5, 109.7, 56.2, 31.1, 10.9, 9.6. ESI-HRMS calcd for C14H17N5O3SNa [M + Na]+ 358.0944; found 358.0936.
4.1.8. N-(4-methoxyphenyl)-3-nitro-4-hydroxy-benzamide (21)
4-hydroxy-3-nitrobenzoic acid (5.00 g, 27.3mmoL) and 4-methoxylaniline (4.03 g, 32.8 mmoL) were reacted according to general procedure A to afford 21 (4.08 g, yield 52%). 1H NMR (400 MHz, CDCl3) δ 10.81 (s, 1H), 8.62 (s, 1H), 8.15 (d, J = 7.6, 1H), 7.52 (d, J = 8.4, 2H), 7.27 (m, 1H), 6.92 (d, J = 8.8 Hz, 2H), 3.82 (s, 3H). LC/MS (ESI, m/z): 289.1 [M + H]+.
4.1.9. N-(4-methoxyphenyl)-3-nitro-4-ethoxy-benzamide (22)
To a solution of compound 21 (0.289 g, 1.0 mmoL) in tetrahydrofuran (8.0 mL) was added ethanol (67 μL, 1.2 mmoL) and triphenylphosphine (0.520 g, 2.0 mmoL). The mixture was cooled at 0 °C and Diethyl azodicarboxylate in toluene (40%, 0.77 mL, 1.7 mmoL) was added dropwise. The mixture was then stirred at room temperature until the starting material was completely disappeared. The reaction was quenched with water and extracted with dichloromethane. The organic layer was washed with brine, dried over Na2SO4, concentrated in vacuo, and further purified by flash chromatography on silica gel to give 22 (0.240 g, 76%). 1H NMR (400 MHz, CDCl3) δ 8.31 (s, 1H), 8.10 (d, J = 4.8 Hz, 1H), 7.72 (br s, 1H), 7.51 (d, J = 7.0 Hz, 2H), 7.15 (d, J = 6.8 Hz, 1H), 6.91 (d, J = 7.0 Hz, 2H), 4.27 (q, J = 5.2 Hz, 2H), 3.82 (s, 3H), 1.51 (t, J = 4.8 Hz, 3H); 13C NMR (101 MHz, CDCl4) δ 162.9, 156.9, 154.7, 139.3, 133.2, 130.4, 126.7, 124.1, 122.3, 114.3, 65.8, 55.5, 14.4. LC/MS (ESI, m/z): 317.1 [M + H]+.
4.1.10. N-(4-methoxyphenyl)-3-propionamido-4-ethoxy-benzamide (36)
Compound 22 (0.5 mmoL) was reduced according to general procedure B to afford 29, which was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 36 (0.145 g, yield 85%). 1H NMR (400 MHz, CDCl3) δ 8.91 (d, J = 2.0 Hz, 1H), 7.85 (br s, 1H), 7.78 (br s, 1H), 7.76 (dd, J = 8.8, 2.0 Hz, 1H), 7.54 (d, J = 8.8 Hz, 2H), 6.97 (d, J = 8.8 Hz, 1H), 6.90 (d, J = 9.2 Hz, 2H), 4.20 (q, J = 14.0, 7.2 Hz, 2H), 3.81 (s, 3H), 2.49 (q, J = 15.2, 7.6 Hz, 2H), 1.50 (t, J = 7.2 Hz, 3H), 1.28 (t, J = 7.6 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.3, 165.1, 156.5, 149.6, 131.3, 127.3, 124.7, 122.3, 116.9, 114.2, 110.9, 64.6, 55.5, 31.1, 14.8, 9.6. ESI-HRMS calcd for C19H23N2O4 [M + H]+ 343.1652; found 343.1650.
4.1.11. N-(4-methoxyphenyl)-3-nitro-4-propoxy-benzamide (23)
Compound 21 was reacted with n-propanol (90 μL, 1.2 mmoL) according to a method similar to that of compound 22 to afford 23 (0.280 g, 85%). 1H NMR (600 MHz, DMSO‑d 6) δ 8.30 (d, J = 1.6 Hz, 1H), 8.06 (dd, J = 9.0, 1.6 Hz, 1H), 8.00 (s, 1H), 7.50 (d, J = 9.0 Hz, 2H), 7.10 (d, J = 9.0 Hz, 1H), 6.86 (d, J = 9.0 Hz, 2H), 4.11 (t, J = 6.0 Hz, 2H), 3.79 (s, 3H), 1.88 (m, 2H), 1.07 (t, J = 7.6 Hz, 3H); 13C NMR (150 MHz, DMSO‑d 6) δ 163.1, 156.8, 154.8, 139.0, 133.3, 130.5, 126.6, 124.2, 122.4, 114.3, 114.2, 71.4, 55.4, 22.2, 10.3. LC/MS (ESI, m/z): 331.1 [M + H]+.
4.1.12. N-(4-methoxyphenyl)-3-propionamido-4-propoxy-benzamide (37)
Compound 23 (0.165 g, 0.5 mmoL) was reduced according to general procedure B to afford 30, which was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 37 (0.145 g, yield 85%). 1H NMR (400 MHz, CDCl3) δ 8.88 (s, 1H), 7.88 (br s, 1H), 7.86 (s, 1H), 7.78 (dd, J = 8.8, 2.0 Hz, 1H), 7.54 (dd, J = 6.8, 2.0 Hz, 2H), 6.96 (d, J = 8.4 Hz, 1H), 6.96 (d, J = 8.4 Hz, 1H), 6.90 (dd, J = 6.8, 2.0 Hz, 2H), 4.08 (t, J = 6.4 Hz, 2H), 3.81 (s, 3H), 2.49 (q, J = 7.6 Hz, 2H),1.91 (m, 2H), 1.28 (t, J = 7.6 Hz, 3H), 1.09 (t, J = 7.6 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.1, 164.9, 156.4, 149.5, 131.2, 127.2, 124.5, 122.1, 116.7, 114.0, 110.8, 70.3, 55.4, 31.0, 22.3, 10.4, 9.5. ESI-HRMS calcd for C20H25N2O4 [M + H]+ 357.1809; found 357.1795.
4.1.13. N-(4-methoxyphenyl)-3-nitro-4-(isopropoxy)-benzamide (24)
Compound 21 was reacted with isopropanol (93 μL, 1.2 mmoL) according to a method similar to that of compound 22 to afford 24 (0.264 g, 80%). 1H NMR (400 MHz, CDCl3) δ 8.27 (s, 1H), 8.06 (d, J = 2.0 Hz, 1H), 7.77 (s, 1H), 7.51 (d, J = 8.8 Hz, 2H), 7.15 (d, J = 8.8 Hz, 2H), 6.89 (dd, J = 8.8, 2.0 Hz, 2H), 4.77 (m, 1H), 3.81 (s, 3H), 1.44 (d, J = 7.0 Hz, 6H). LC/MS (ESI, m/z): 331.1 [M + H]+.
4.1.14. N-(4-methoxyphenyl)-3-propionamido-4-isopropoxy-benzamide (38)
Compound 24 (0.165 g, 0.5 mmoL) was reduced according to general procedure B to afford 31, which was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 38 (0.128 g, yield 72%).1H NMR (400 MHz, CDCl3) δ 8.89 (s, 1H), 7.87 (br s, 2H), 7.76 (dd, J = 8.4, 2.4 Hz, 1H), 7.55 (dd, J = 6.8, 2.0 Hz, 2H), 6.97 (d, J = 8.8 Hz, 1H), 6.89 (dd, J = 6.8, 2.0 Hz, 2H), 4.70 (m, 1H), 3.80 (s, 3H), 2.48 (q, J = 7.6 Hz, 2H), 1.41 (d, J = 6.0 Hz, 6H), 1.28 (t, J = 7.6 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.1, 165.0, 156.3, 148.4, 131.2, 127.0, 124.4, 122.2, 116.9, 114.0, 112.0, 71.5, 55.4, 30.9, 22.0, 9.5. ESI-HRMS calcd for C20H25N2O4 [M + H]+ 357.1809; found 357.1809.
4.1.15. N-(4-methoxyphenyl)-3-nitro-4-(3-chloropropoxy)-benzamide (25)
Compound 21 was reacted with 3-chloropropanol (0.10 mL, 1.2 mmoL) according to a method similar to that of compound 22 to afford 25 (0.316 g, 87%). 1H NMR (500 MHz, CDCl3) δ 8.36 (s, 1H), 8.22 (s, 1H), 8.10 (d, J = 8.0 Hz, 1H), 7.51 (d, J = 8.5 Hz, 2H), 7.14 (d, J = 8.0 Hz, 1H), 6.86 (d, J = 8.5 Hz, 2H), 4.32 (t, J = 5.0 Hz, 2H), 3.79 (s, 5H), 2.29 (m, 2H). LC/MS (ESI, m/z): 365.1 [M + H]+.
4.1.16. N-(4-methoxyphenyl)-4-(3-chloropropoxy)-3-propionamidobenzamide (39)
Compound 25 (0.183 g, 0.5 mmoL) was reduced according to general procedure B to afford 32, which was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 39 (0.116 g, yield 65%). 1H NMR (500 MHz, CDCl3) δ 8.90 (s, 1H), 7.80 (m, 3H), 7.53 (d, J = 8.5, 2H), 7.00 (d, J = 8.5 Hz, 1H), 6.90 (d, J = 8.5 Hz, 2H), 4.30 (m, 2H), 3.81 (s, 3H), 3.75 (m, 2H), 2.47 (m, 2H), 2.35 (t, J = 5.5 Hz, 2H), 1.28 (t, J = 7.5 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 172.4, 165.0, 156.6, 131.3, 127.6, 122.4, 117.3, 114.3, 111.3, 66.2, 55.6, 41.5, 31.9, 31.2, 9.7. ESI-HRMS calcd for C20H24N2O4Cl [M + H]+ 391.1419; found 391.1411.
4.1.17. N-(4-methoxyphenyl)-3-nitro-4-(3-bimethylaminopropoxy)-benzamide (26)
To a solution of compound 25 (0.300 g, 0.82 mmoL) in DMF (5.0 mL) was added sodiumiodide (0.246 g, 1.64 mmoL) and dimethylamine (0.82 mL, 2.0 M in THF). The mixture was stirred at 70 °C for 4 h. After cooling to rt, the solvent was removed, and the residue was purified by C-18 functionalized silica chromatography (eluents 5–90% MeOH in deionized water with 0.5% NH4OH(aq) to afford compound 26 (0.178 g, 58%). 1H NMR (400 MHz, CDCl3) δ 8.36 (s, 1H), 8.08 (d, J = 8.8 Hz, 1H), 7.87 (br s, 1H), 7.55 (d, J = 8.8 Hz, 2H), 7.17 (d, J = 8.8 Hz, 1H), 6.92 (dd, J = 8.8, 2.0 Hz, 2H), 4.31 (q, J = 6.4 Hz, 2H), 3.81 (s, 3H), 2.69 (m, 2H), 2.41 (s, 6H), 2.13 (m, 3H); 13C NMR (150 MHz, CDCl3) δ 157.0, 155.0, 139.3, 133.3, 130.6, 126.9, 124.3, 122.4, 114.7, 114.4, 68.3, 55.8, 55.6, 45.6, 29.8, 27.1. ESI-HRMS calcd for C19H24N3O5 [M + H]+ 374.1710; found 374.1713.
4.1.18. N-(4-methoxyphenyl)-3-amino-4-(3-(dimethylamino)propoxy)benzamide (33)
Compound 26 (0.183 g, 0.5 mmoL) was reduced according to general procedure B to afford 33 (0.163 g, 95%). 1H NMR (500 MHz, DMSO‑d 6) δ 9.83 (s, 1H), 7.67 (m, 3H), 7.25 (s, 1H), 7.20 (s, 1H), 6.90 (m, 3H), 4.91 (m, 2H), 4.07 (t, J = 5.5 Hz, 2H), 3.76 (s, 3H), 2.43 (m, 2H), 2.18 (s, 6H), 1.91 (t, J = 5.5 Hz, 2H); 13C NMR (150 MHz, CD3OD) δ 168.9, 158.1, 150.9, 138.1, 132.9, 128.7, 124.1, 119.1, 114.9, 111.7, 67.6, 57.3, 55.8, 45.4, 28.1. LC/MS (ESI, m/z): 344.2 [M + H]+.
4.1.19. N-(4-methoxyphenyl)-4-(3-(dimethylamino)propoxy)-3-propionamidobenzamide (40)
Compound 33 (0.150 g, 0.43 mmol) was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 40 (0.92 g, yield 54%). 1H NMR (500 MHz, CD3OD) δ 8.32 (s, 1H), 7.75 (d, J = 7.0, 1H), 7.54 (d, J = 7.5, 2H), 7.13 (d, J = 7.5 Hz, 1H), 6.92 (d, J = 7.5 Hz, 2H), 4.22 (t, J = 5.0 Hz, 2H), 3.79 (s, 3H), 3.05 (t, J = 6.5 Hz, 2H), 2.68 (s, 6H), 2.50 (m, 2H), 2.20 (m, 2H), 1.24 (t, J = 6.5 Hz, 3H); 13C NMR (150 MHz, CD3OD) δ 175.6, 167.9, 158.2, 154.2, 132.8, 128.6, 127.8, 126.7, 124.2, 124.0, 114.9, 112.7, 67.3, 56.7, 55.8, 44.2, 30.8, 26.3, 10.3. ESI-HRMS calcd for C22H30N3O4 [M + H]+ 400.2231; found 400.2227.
4.1.20. N-(4-methoxyphenyl)-4-(3-(4-methylpiperazin-1-yl)propoxy)-3-nitrobenzamide (27)
To a solution of compound 25 (0.530 g, 1.46 mmoL) in DMF (5.0 mL) was added 1-methylpiperazine (0.23 mL, 2.12 mmol) according to a method similar to that of compound 26 to afford 27 (0.490 g, 80%). 1H NMR (600 MHz, CDCl3) δ 8.31 (d, J = 1.8 Hz), 1H), 8.18 (s, 1H), 8.07 (dd, J = 8.4, 1.8 Hz, 1H), 7.50 (d, J = 8.4, 2H), 7.12 (d, J = 9.0 Hz, 1H), 6.85 (d, J = 8.5 Hz, 2H), 4.21 (t, J = 6.0 Hz, 2H), 3.78 (s, 3H), 2.54 (t, J = 6.6 Hz, 2H), 2.48 (m, 8H), 2.28 (s, 3H), 2.02 (m, 2H); 13C NMR (150 MHz, CDCl3) δ 163.3, 156.9, 154.8, 139.1, 133.5, 130.7, 126.9, 124.4, 122.6, 114.5, 114.3, 68.3, 55.5, 55.1, 54.4, 53.1, 46.0, 29.8, 26.2. LC/MS (ESI, m/z): 429.2 [M + H]+.
4.1.21. N-(4-methoxyphenyl)-3-amino-4-(3-(4-methylpiperazin-1-yl)propoxy)benzamide (34)
Compound 27 (0.214 g, 0.5 mmoL) was reduced according to general procedure B to afford compound 34. 1H NMR (600 MHz, CD3OD) δ 7.52 (d, J = 9.0 Hz, 1H), 7.30 (s, 1H), 7.28 (d, J = 8.4 Hz, 1H), 6.90 (m, 3H), 4.12 (t, J = 6.0 Hz, 2H), 3.79 (s, 3H), 2.57 (t, J = 7.2 Hz, 2H), 2.29 (s, 6H), 2.03 (m, 2H); 13C NMR (150 MHz, CD3OD) δ 168.9, 158.0, 150.9, 138.2, 132.9, 128.7, 124.1, 119.0, 115.1, 114.9, 111.8, 67.7, 56.1, 55.8, 55.6, 53.6, 45.9, 27.4. LC/MS (ESI, m/z): 399.2 [M + H]+.
4.1.22. N-(4-methoxyphenyl)-3-propionamido-4-(3-bimethylaminopropoxy)-benzamide (41)
Compound 34 (0.189 g, 0.5 mmol) was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 41 (0.111 g, yield 49%). 1H NMR (600 MHz, CDCl3) δ 8.84 (s, 1H), 8.00 (s, 1H), 7.86 (s, 1H), 7.73 (dd, J = 8.4, 1.8 Hz, 1H), 7.53 (d, J = 9.0 Hz, 2H), 6.54 (d, J = 8.4 Hz, 1H), 6.87 (d, J = 9.0 Hz, 2H), 4.14 (t, J = 6.0 Hz, 2H), 3.79 (s, 3H), 2.60 (m, 10H), 2.47 (m, 2H), 2.40 (s, 3H), 2.06 (m, 2H), 2.04 (m, 2H), 1.25 (m, 3H); 13C NMR (150 MHz, CDCl3) δ 173.5, 165.1, 156.6, 149.7, 131.4, 127.6, 127.5, 124.7, 122.4, 117.4, 114.3, 111.1, 67.1, 55.6, 54.7, 54.5, 45.4, 31.1, 26.4, 9.7. LC/MS (ESI, m/z): 455.2 [M + H]+.
4.1.23. N-(4-methoxyphenyl)-4-(3-morpholinopropoxy)-3-nitrobenzamide (28)
To a solution of compound 25 (0.200 g, 0.54 mmoL) in DMF (3.0 mL) was added morpholine (0.12 mL, 0.81 mmol) according to a method similar to that of compound 26 to afford 28 (0.133 g, 59%). 1H NMR (400 MHz, CDCl3) δ 8.33 (d, J = 2.4 Hz, 1H), 8.10 (dd, J = 8.8, 2.0 Hz, 1H), 7.77 (br s, 1H), 7.52 (d, J = 8.8 Hz, 2H), 7.21 (d, J = 8.8, 1H), 6.91 (d, J = 9.2 Hz, 2H), 4.27 (t, J = 6.0 Hz, 2H), 3.82 (s, 3H), 3.74 (m, 4H), 2.61 (m, 2H), 2.51 (m, 4H), 2.07 (m, 2H). LC/MS (ESI, m/z): 416.2 [M + H]+.
4.1.24. N-(4-methoxyphenyl)-3-amino-4-(3-morpholinopropoxy)benzamide (35)
Compound 28 (0.214 g, 0.5 mmoL) was reduced according to general procedure B to afford 35. 1H NMR (400 MHz, CD3OD) δ 7.63 (d, J = 7.2 Hz, 2H), 7.21 (s, 1H), 7.17 (d, J = 6.4 Hz, 1H), 6.87 (m, 3H), 4.04 (m, 2H), 3.72 (s, 3H), 3.60 (m, 4H), 2.49 (m, 2H), 2.35 (m, 4H), 1.94 (m, 2H); 13C NMR (100 MHz, DMSO‑d 6) δ 165.2, 155.2, 147.9, 137.5, 132.5, 127.6, 121.7, 115.9, 113.1, 110.6, 66.0, 61.3, 60.5, 55.0, 54.5, 53.0, 30.5. LC/MS (ESI, m/z): 386.2 [M + H]+.
4.1.25. N-(4-methoxyphenyl)-4-(3-morpholinopropoxy)-3-propionamidobenzamide (42)
Compound 35 (0.194 g, 0.5 mmol) was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 42 (0.100 g, yield 45%). 1H NMR (400 MHz, CDCl3) δ 7.91 (dd, J = 8.4, 2.4 Hz, 1H), 7.70 (s, 1H), 7.61 (s, 1H), 7.50 (d, J = 9.2 Hz, 2H), 7.04 (d, J = 8.4 Hz, 1H), 6.90 (d, J = 9.2 Hz, 2H), 4.09 (m, 2H), 3.81 (s, 3H), 3.75 (m, 4H), 2.62 (m, 2H), 2.53 (m, 6H), 1.95 (m, 2H), 1.11 (t, J = 7.2 Hz, 3H); 13C NMR (100 MHz, CDCl3) δ 176.8, 163.7, 156.6, 156.3, 131.4, 130.1, 129.0, 127.7, 127.2, 121.9, 113.9, 112.3, 66.6, 66.5, 55.4, 54.9, 53.5, 31.4, 25.7, 8.9. LC/MS (ESI, m/z): 442.2 [M + H]+.
4.1.26. Methyl 3-oxo-3,4-dihydro-2H-benzo[b] [1,4]oxazine-6-carboxylate (44)
2-bromoacetyl bromide (0.48 mL, 5.0 mmol) was added dropwise to a solution of methyl 3-amino-4-hydroxybenzoate (0.84 g, 5.0 mmol) and NaHCO3 (0.69 g, 8.25 mmol) in EtOAc/H2O (40 mL, 1:1) at 0 °C. The mixture was then stirred at room temperature until the starting material was completely disappeared. The reaction was extracted with EtOAc (50 mL). The organic layer was orderly washed with 10% HCl, water, and brine, dried over Na2SO4, and concentrated in vacuo to give methyl 3-(2-bromoacetamido)-4-hydroxybenzoate (43, 1.07 g). The compound was dissolved in DMF (5.0 mL) and K2CO3 (0.56 g, 5.25 mmol) was added the above mixture. The mixture was heated to 80 °C and stirred for 3 h until the starting material was completely disappeared. After cooling to room temperature, the solvent was removed, and the residue was extracted with ethyl acetate, washed with water and brine in turn, and dried over anhydrous Na2SO4. After filtration and concentration, compound 44 was obtained. 1H NMR (400 MHz, CDCl3) δ 8.71 (s, 1H), 7.70 (dd, J = 8.4, 2.0 Hz, 1H), 7.56 (d, J = 2.0 Hz, 1H), 7.00 (d, J = 8.4 Hz, 2H), 4.69 (s, 2H), 3.91 (s, 3H).
4.1.27. N-(4-methoxyphenyl)-3-oxo-3,4-dihydro-2H-benzo[b] [1,4]oxazine-6-carboxamide (45)
To a solution of compound 44 (0.72 g, 3.48 mmoL) in MeOH/H2O (12 mL, 2:1) was added sodium hydroxide (0.28 g, 7.0 mmoL). The mixture was stirred at 70 °C for 3 h to give substituted benzoic acid, which was reacted 4-methoxy aniline according to general procedure A to give the target compound 45 (0.593 g, 82%). 1H NMR (400 MHz, DMSO‑d 6) δ 10.9 (s, 1H), 10.03 (s, 1H), 7.63 (d, J = 8.4 Hz, 2H), 7.57 (dd, J = 8.4, 2.0 Hz, 1H), 7.46 (d, J = 2.0 Hz, 1H), 7.00 (d, J = 8.4 Hz, 1H), 6.91 (d, J = 8.4 Hz, 2H), 4.66 (s, 2H), 3.74 (s, 3H). LC/MS (ESI, m/z): 299.1 [M + H]+.
4.1.28. tert-butyl 6-((4-methoxyphenyl)carbamoyl)-2,3-dihydro-4H-benzo[b] [1,4]oxazine-4-carboxylate (47)
To the solution of methyl 3,4-dihydro-2H-benzo[b] [1,4]oxazine-6-carboxylate (0.20 g, 1.03 mmol) in acetonitrile (2.5 mL) was added DMAP (0.025 g, 0.2 mmol) and Ditertbutyl dicarbonate (0.23 g, 1.14 mmol). The mixture was stirred at room temperature for 3 h until the starting material was completely disappeared. The solvent was removed, and the residue was extracted with ethyl acetate, washed with water and brine in turn, and dried over anhydrous Na2SO4. After filtration and concentration, the residual material was purified by flash column chromatography (silica gel) eluted with petroleum ether and ethyl acetate (20:1) to yield N-Boc substituted product. The compound was dissolved in MeOH/H2O (5 mL, 2:1) and added sodium hydroxide (0.054 g, 1.36 mmoL). The mixture was stirred at 70 °C for 3 h to give substituted benzoic acid (46). 1H NMR (400 MHz, CDCl3) δ 8.54 (s, 1H), 7.74 (dd, J = 8.4, 2.0 Hz, 1H), 6.92 (d, J = 8.4 Hz, 1H), 4.31 (t, J = 4.4 Hz, 2H), 3.88 (t, J = 4.4 Hz, 2H), 1.57 (s, 9H). Compound 46 was reacted with 4-methoxy aniline according to general procedure A to give the compound 47 (0.341 g, 89%). 1H NMR (400 MHz, CDCl3) δ 8.38 (s, 1H), 7.69 (s, 1H), 7.52 (m,3H), 6.94 (d, J = 8.4 Hz, 1H), 6.90 (d, J = 8.4 Hz, 2H), 4.30 (t, J = 4.4 Hz, 2H), 3.89 (t, J = 4.4 Hz, 2H), 3.81 (s, 3H), 1.57 (s, (9H). LC/MS (ESI, m/z): 385.2 [M + H]+.
4.1.29. N-(4-methoxyphenyl)-3,4-dihydro-2H-benzo[b] [1,4]oxazine-6-carboxamide (48)
To a solution of compound 47 (0.21 g, 0.52 mmol) in dichloromethane (4.0 mL) was added trifluoroacetic acid (2.0 mL) at °C and the mixture was stirred for 3 h until the starting material was completely disappeared. The reaction was extracted with dichloromethane (20 mL) and the organic layer was orderly washing with 0.5 M sodium hydroxide solution, water and brine, dried with Na2SO4. After filtration and concentration, compound 48 was obtained. 1H NMR (400 MHz, CDCl3) δ 7.67 (s, 1H), 7.50 (d, J = 9.2 Hz, 1H), 7.24 (d, J = 2.0 Hz, 1H), 7.11 (dd, J = 8.4, 2.0 Hz, 1H), 6.89 (d, J = 8.4 Hz, 2H), 6.82 (d, J = 8.4 Hz, 1H), 5.29 (s, 1H), 4.30 (t, J = 4.4 Hz, 2H), 3.81 (s, 3H), 3.45 (t, J = 4.4 Hz, 2H). LC/MS (ESI, m/z): 285.1 [M + H]+.
4.1.30. 4-Isopropoxy-3-nitrobenzoic acid (49)
To a solution of methyl 4-hydroxy-3-nitrobenzoate (1.50 g, 7.6 mmoL) in DMF (15.0 mL) was added 2-bromopropane (1.10 mL, 11.4 mmoL) and potassium carbonate (1.57 g, 11.4 mmoL). The mixture was stirred at 60 °C for 12 h. After cooling to rt, the solvent was removed, and the residue was extracted with ethyl acetate, washed with water and brine in turn, and dried over anhydrous Na2SO4. After filtration and concentration, the obtained residue was dissolved in methanol and THF (10 mL, 1:1) and 1 N NaOH (10 mL) was added. The mixture was stirred at 60 °C for 1.5 h. After cooling to rt, the solvent was removed, and the residue was extracted with ethyl acetate, washed with 1 N HCl, water, and brine in turns, and dried over anhydrous Na2SO4. The mixture was filtered, and the solvent was removed to give compound 49 (1.10 g, 64%). LC/MS (ESI, m/z): 224.0 [M−H]+.
4.1.31. N-(4-dimethylaminophenyl)-3-nitro-4-isopropoxy-benzamide (50)
Compound 49 (0.450 g, 2.0 mmoL) and 4-dimethylamino-aniline (0.272 g, 2.0mmoL) were reacted according to general procedure A to afford 50 (0.597 g, yield 87%). 1H NMR (500 MHz, CDCl3) δ 8.26 (s, 1H), 8.06 (d, J = 9.5 Hz, 1H), 7.70 (s, 1H), 7.45 (d, J = 8.0 Hz, 2H), 7.13 (d, J = 9.0 Hz, 1H), 6.72 (d, J = 9.5 Hz, 2H), 4.76 (m, 1H), 2.94 (s, 6H), 1.42 (d, J = 6.0 Hz, 6H); 13C NMR (125 MHz, CDCl3) δ 163.1, 153.7, 148.4, 140.2, 133.2, 127.2, 127.0, 124.2, 122.5, 115.6, 113.0, 73.1, 40.9, 21.9. ESI-HRMS calcd for C18H22N3O4 [M + H]+ 344.1605; found 344.1601.
4.1.32. N-(4-dimethylaminophenyl)-3-amino-4-isopropoxy-benzamide (51)
Compound 50 (0.514 g, 1.5 mmoL) was reduced according to general procedure B to afford 51. 1H NMR (500 MHz, CDCl3) δ 7.59 (s, 1H), 7.45 (d, J = 9.5 Hz, 2H), 7.26 (s, 1H), 7.18 (d, J = 9.0 Hz, 1H), 6.80 (d, J = 9.0 Hz, 1H), 6.73 (d, J = 9.0 Hz, 2H), 4.61 (m, 1H), 3.91 (br s, 2H), 2.93 (s, 6H), 1.38 (d, J = 6.0 Hz, 6H); 13C NMR (125 MHz, CDCl3) δ 165.5, 147.9, 137.1, 128.1, 127.7, 121.9, 117.1, 113.9, 113.1, 112.0, 70.6, 40.9, 22.1. LC/MS (ESI, m/z): 314.2 [M + H]+.
4.1.33. N-(4-dimethylaminophenyl)-3-propionamido-4-isopropoxy-benzamide (52)
Compound 51 (0.156 g, 0.5 mmoL) was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 52 (0.127 g, 69%). 1H NMR (500 MHz, CDCl3) δ 8.88 (s, 1H), 7.86 (s, 1H), 7.82 (s, 1H), 7.76 (d, J = 9.5 Hz, 1H), 7.48 (q, J = 9.5 Hz, 2H), 6.96 (d, J = 9.0 Hz, 1H), 6.73 (d, J = 8.0 Hz, 2H), 4.70 (m, 1H), 2.93 (s, 6H), 2.48 (d, J = 7.5 Hz, 2H), 1.42 (d, J = 5.5 Hz, 6H), 1.28 (t, J = 7.5 Hz, 3H); 13C NMR (125 MHz, CDCl3) δ 172.2, 165.0, 148.4, 128.0, 127.5, 124.6, 122.2, 117.1, 113.3, 112.2, 71.6, 41.1, 31.1, 22.1, 9.6. ESI-HRMS calcd for C21H28O3N3 [M + H]+ 370.2125; found 370.2117.
4.1.34. N-(4-dimethylaminophenyl)-3-(2-bromopropionamido)-4-isopropoxy-benzamide (53)
Compound 51 (0.156 g, 0.5 mmoL) was reacted with 2-bromopropionyl chloride (50 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 53 (0.134 g, yield 60%). 1H NMR (500 MHz, CDCl3) δ 8.94 (s, 1H), 8.79 (s, 1H), 7.78 (s, 1H), 7.78 (d, J = 9.5 Hz, 1H), 7.47 (d, J = 8.5 Hz, 2H), 6.98 (d, J = 8.5 Hz, 1H), 6.73 (d, J = 8.5 Hz, 2H), 4.70 (m, 1H), 4.60 (q, J = 6.0 Hz, 1H), 2.91 (s, 6H), 1.98 (d, J = 6.0 Hz, 3H), 1.42 (d, J = 5.5 Hz, 6H); 13C NMR (125 MHz, CDCl3) δ 167.3, 164.9, 149.1, 147.8, 128.2, 127.5, 127.4, 125.1, 117.2, 113.2, 112.4,72.0, 45.7, 41.0, 23.1, 22.1. ESI-HRMS calcd for C21H27O3N3Br [M + H]+ 448.1230; found 448.1235.
4.1.35. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-nitro-4-isopropoxy-benzamide (54)
Compound 49 (0.450 g, 2.0 mmoL) and 3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl) aniline (0.546 g, 2.0 mmoL) were reacted according to general procedure A to afford 54 (0.538 g, yield 56%). 1H NMR (500 MHz, CDCl3) δ 8.32 (m, 3H), 8.10 (d, J = 8.5 Hz, 1H), 7.87 (s, 1H), 7.85 (d, J = 8.5 Hz, 1H), 7.75 (m, 1H), 7.15 (dd, J = 8.5, 3.0 Hz, 1H), 4.78 (m, 1H), 3.62 (s, 2H), 2.52 (m, 8H), 2.32 (m, 3H), 1.44 (d, J = 6.0 Hz, 6H); 13C NMR (125 MHz, CDCl3) δ 163.5, 154.0, 139.9, 136.4, 133.7, 133.4, 131.4, 129.2 (q, J = 30.1 Hz),125.9, 124.5, 124.1 (q, J = 260.1 Hz), 123.7, 118.1 (d, J = 6.0 Hz), 115.5, 73.1, 57.7, 55.1, 52.8, 45.8, 21.6. ESI-HRMS calcd for C23H28O4N4F3 [M + H]+ 481.2057; found 481.2043.
4.1.36. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-amino-4-isopropoxy-benzamide (55)
Compound 54 (0.481 g, 1.0 mmoL) was reduced according to general procedure B to afford compound 55. 1H NMR (500 MHz, CDCl3) δ 7.84 (m, 3H), 7.73 (d, J = 8.5 Hz, 1H), 7.19 (d, J = 8.5 Hz, 1H), 6.81 (d, J = 8.5 Hz, 1H), 4.63 (m, 1H), 3.94 (br s, 2H), 3.62 (s, 2H), 2.52 (m, 8H), 2.31 (m, 3H), 1.39 (d, J = 6.0 Hz, 6H).
4.1.37. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-propionamido-4-isopropoxy-benzamide (56)
Compound 55 (0.225 g, 0.5 mmoL) was reacted with propionyl chloride (44 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 56 (0.131 g, yield 52%). 1H NMR (500 MHz, CDCl3) δ 8.91 (s, 1H), 8.22 (s, 1H), 7.91 (s, 1H), 7.86 (m, 2H), 7.76 (d, J = 8.5 Hz, 1H), 7.64 (d, J = 8.5 Hz, 1H), 6.98 (d, J = 8.5 Hz, 1H), 4.71 (m, 1H), 3.66 (s, 2H), 2.74 (m, 8H), 2.47 (m, 5H), 1.41 (d, J = 7.5 Hz, 6H), 1.27 (t, J = 7.5 Hz, 3H); 13C NMR (125 MHz, CDCl3) δ 172.2, 165.6, 149.0, 137.7, 132.1, 131.3, 129.2 (q, J = 30.6 Hz),127.7, 126.5, 124.9, 124.2(q, J = 272.6 Hz), 123.5, 118.1 (d, J = 6.3 Hz), 117.7, 112.1, 71.7, 54.5, 51.4, 45.9, 44.8, 31.0, 9.6. ESI-HRMS calcd for C26H34O3N4F3 [M + H]+ 507.2578; found 507.2577.
4.1.38. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-(2-bromopropionamido)-4-isopropoxy-benzamide (57)
Compound 55 (0.225 g, 0.5 mmoL) was reacted with 2-bromopropionyl chloride (50 μL, 0.5 mmoL) and TEA (0.105 mL, 0.75 mmoL) according to general procedure C to afford compound 57 (0.134 g, yield 46%). 1H NMR (500 MHz, CDCl3) δ 8.94 (s, 1H), 8.81 (s, 1H), 8.16 (s, 1H), 7.88 (s, 1H), 7.85 (d, J = 8.5 Hz, 1H), 7.79 (d, J = 8.5 Hz, 1H), 7.74 (m, 1H), 6.99 (d, J = 8.5 Hz, 1H), 4.72 (m, 1H), 4.60 (m, 1H), 3.61 (s, 2H), 2.49 (m, 8H), 2.28 (m, 3H), 1.99 (d, J = 6.0 Hz, 3H), 1.43 (d, J = 5.0 Hz, 6H); 13C NMR (125 MHz, CDCl3) δ 167.5, 165.2, 149.6, 136.9, 133.4, 131.4, 129.4, 127.7, 126.6, 125.4, 123.4, 118.4, 117.9, 117.0, 112.5, 72.2, 60.5, 59.7, 57.9, 55.3, 53.0, 46.0, 45.7, 42.2, 23.2, 22.1, 14.3. ESI-HRMS calcd for C26H33BrF3N4O3 [M + H]+ 585.1683; found 585.1684.
4.1.39. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-nitro-4-(3-chloropropoxy)-benzamide (60)
To a solution of methyl 4-hydroxy-3-nitrobenzoate (58a, 1.50 g, 7.6 mmoL) in DMF (15.0 mL) was added 1-bromo-3-chloropropane (1.12 mL, 11.4 mmoL) and potassium carbonate (1.56 g, 11.4 mmoL). The mixture was stirred at 60 °C for 12 h. After cooling to rt, the solvent was removed, and the residue was extracted with ethyl acetate, washed with water and brine in turn, and dried over anhydrous Na2SO4. After filtration and concentration, the obtained residue was purified by flash column chromatography (silica gel) eluted with petroleum ether and ethyl acetate (V = 5:1) to yield methyl 3-chloropropoxy-3-nitrobenzoate (1.95 g, 94%). 1H NMR (500 MHz, CDCl3) δ 8.52 (s, 1H), 8.23 (s, 1H), 7.14 (s, 1H), 4.33 (m, 2H), 3.93 (s, 3H), 3.66 (m, 2H), 2.31 (m, 2H). The compound (1.16 g, 4.25 mmoL) was dissolved in tetrahydrofunan (10 mL) and methanol (10 mL) and lithium hydroxide (0.117 g, 5.10 mmoL) was added. The mixture was stirred at room temperature for about 3.0 h. The solvent was removed, and the residue was extracted with ethyl acetate, washed with 1 N HCl, water, and brine in turns, and dried over anhydrous Na2SO4. After 2 h, the mixture was filtered, and the solvent was removed to give 4-(3-chloropropoxyl)-3-nitrobenzoic acid (59a, 1.10 g, 98%). 1H NMR (500 MHz, CDCl3) δ 8.58 (s, 1H), 8.27 (d, J = 7.5 Hz, 1H), 7.18 (d, J = 7.5 Hz, 1H), 4.37 (t, J = 5.0 Hz, 2H), 3.81 (t, J = 5.5 Hz, 2H), 2.33 (t, J = 6.0 Hz, 2H). Compound 59a (0.518 g, 2.0 mmoL) and 3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)aniline (0.546 g, 2.0 mmoL) were reacted according to general procedure A to afford 60 (0.894 g, yield 87%). 1H NMR (500 MHz, CDCl3) δ 8.45 (s, 1H), 8.23 (m, 2H), 7.92 (m, 2H), 7.82 (d, J = 8.5 Hz, 1H), 7.27 (d, J = 8.5 Hz, 1H), 4.41 (t, J = 5.0 Hz, 2H), 3.86 (t, J = 6.0 Hz, 2H), 3.68 (s, 2H), 2.58 (m, 8H), 2.37 (m, 5H); 13C NMR (125 MHz, CDCl3) δ 163.5, 154.8, 149.7, 139.0, 136.5, 133.9, 129.3 (q, J = 30.6 Hz),126.7, 124.8, 124.2 (q, J = 273.9 Hz), 123.7, 118.1 (d, J = 4.5 Hz), 114.6, 66.3, 57.8, 55.2, 52.9, 45.9, 41.0, 31.7. ESI-HRMS calcd for C23H27O4N4ClF3 [M + H]+ 515.1667; found 515.1667.
4.1.40. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-fluoro-4-(3-chloropropoxy)-benzamide (61)
Compound 61 was synthesized using a method similar to that of 60. Methyl 4-hydroxy-3-fluorobenzoate (58b, 0.204 g, 1.20 mmoL) and 1-bromo-3-chloropropane (0.14 mL, 1.44 mmoL) was using the starting materials to yield the intermediate methyl 4-isopropoxy-3-fluorobenzoate (0.250 g, 85%). 1H NMR (500 MHz, CDCl3) δ 7.73 (d, J = 7.5 Hz, 1H), 7.67 (d, J = 11.5 Hz, 1H), 6.94 (t, J = 8.0 Hz, 1H), 4.19 (t, J = 5.5 Hz, 2H), 3.84 (s, 3H), 3.72 (t, J = 6.0 Hz, 1.4H), 3.57 (t, J = 6.0 Hz, 0.6H), 2.32 (t, J = 5.5 Hz, 0.6H), 2.24 (t, J = 5.5 Hz, 1.4H). The intermediate was hydrolyzed to yield 4-(3-chloropropoxyl)-3-fluorobenzoic acid (59b, 0.150 g, 65%). 1H NMR (500 MHz, CDCl3) δ 7.89 (d, J = 7.5 Hz, 1H), 7.81 (d, J = 11.5 Hz, 1H), 7.03 (t, J = 7.5 Hz, 1H), 4.27 (m, 2H), 3.78 (t, J = 6.0 Hz, 1.47H), 3.63 (t, J = 6.0 Hz, 0.62H), 2.39 (t, J = 6.0 Hz, 0.62H), 2.32 (t, J = 6.0 Hz, 1.47H). Compound 59b (0.140 g, 0.60 mmoL) and 3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)aniline (0.160 g, 0.60 mmoL) were reacted according to general procedure A to afford 61 (0.260 g, yield 89%). 1H NMR (500 MHz, CDCl3) δ 8.22 (br s, 1H), 7.88 (s, 1H), 7.83 (m, 2H), 7.74 (m, 2H), 6.96 (d, J = 8.5 Hz, 1H), 4.22 (t, J = 5.0 Hz, 2H), 3.79 (t, J = 6.0 Hz, 2H), 3.60 (s, 2H), 2.48 (m, 8H), 2.28 (m, 5H); 13C NMR (125 MHz, CDCl3) δ 164.5, 157.2, 136.7, 133.9, 131.4, 131.3, 129.4, 129.1, 127.6, 127.4, 124.1 (q, J = 273.3 Hz), 123.5, 123.3, 117.8 (d, J = 6.1 Hz), 112.7, 65.6, 57.9, 55.3, 53.2, 46.1, 41.2, 32.0. ESI-HRMS calcd for C23H27O2N3ClF4 [M + H]+ 488.1722; found 488.1716.
4.1.41. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-chloro-4-(3-chloropropoxy)-benzamide (62)
Compound 62 was synthesized using a method similar to that of 60. Methyl 4-hydroxy-3-chlorobenzoate (58c, 0.204 g, 1.07 mmoL) and 1-bromo-3-chloropropane (0.16 mL, 1.60 mmoL) was using the starting materials to yield the intermediate methyl 4-isopropoxy-3-chlorobenzoate (0.249 g, 89%). 1H NMR (500 MHz, CDCl3) δ 8.05 (s, 1H), 7.92 (d, J = 7.5 Hz, 1H), 6.95 (d, J = 7.5 Hz, 1H), 4.24 (s, 2H), 3.89 (s, 3H), 3.80 (m, 1.4H), 3.66 (m, 0.6H), 2.39 (m, 0.6H), 2.31 (m, 1.4H). The intermediate was hydrolyzed to yield 4-(3-chloropropoxyl)-3-chlorobenzoic acid (59c, 0.250 g, 99%). 1H NMR (500 MHz, CDCl3) δ 8.12 (s, 1H), 8.00 (d, J = 7.5 Hz, 1H), 6.99 (d, J = 7.5 Hz, 1H), 4.27 (m, 2H), 3.81 (t, J = 6.0 Hz, 1.32H), 3.67 (t, J = 6.0 Hz, 0.61H), 2.41 (t, J = 6.0 Hz, 0.67H), 2.32 (t, J = 6.0 Hz, 1.37H). Compound 59c (0.250 g, 1.08 mmoL) and 3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)-aniline (0.273 g, 1.00 mmoL) were reacted according to general procedure A to afford 62 (0.468 g, yield 93%).1H NMR (500 MHz, CDCl3) δ 8.60 (s, 1H), 7.88 (s, 1H), 7.85 (m, 2H), 7.75 (d, J = 8.5 Hz, 1H), 7.70 (d, J = 8.5 Hz, 1H), 6.91 (d, J = 8.5 Hz, 1H), 4.20 (t, J = 5.0 Hz, 2H), 3.78 (t, J = 6.0 Hz, 2H), 3.58 (s, 2H), 2.46 (m, 8H), 2.28 (m, 5H); 13C NMR (125 MHz, CDCl3) δ 164.7, 157.1, 136.8, 133.7, 131.3, 131.3, 129.5, 129.1 (q, J = 30.4 Hz), 127.6, 127.5, 124.1 (q, J = 272.6 Hz), 123.6, 123.2, 117.9 (d, J = 5.5 Hz), 112.5, 65.5, 57.8, 55.3, 53.1, 46.1, 41.2, 32.0. ESI-HRMS calcd for C23H27O2N3Cl2F3 [M + H]+ 504.1427; found 504.1415.
4.1.42. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-trifluoromethyl-4-(3-chloropropoxy)-benzamide (63)
Compound 63 was synthesized using a method similar to that of 60. Methyl 4-hydroxy-3-(trifluoromethyl)benzoate (58d, 0.204 g, 0.91 mmoL) and 1-bromo-3-chloropropane (0.13 mL, 1.36 mmoL) was using as the starting materials to yield the intermediate methyl 4-(3-chloropropoxyl)-3-(trifluoromethyl)benzoate (0.253 g, 94%). 1H NMR (500 MHz, CDCl3) δ 8.27 (s, 1H), 8.20 (d, J = 8.5 Hz, 1H), 7.05 (d, J = 9.0 Hz, 1H), 4.28 (t, J = 5.0 Hz, 2H), 3.91 (s, 3H), 3.77 (t, J = 6.0 Hz, 1.63H), 3.63 (t, J = 6.0 Hz, 0.37H), 2.37 (t, J = 5.0 Hz, 0.37H), 2.30 (t, J = 6.0 Hz, 1.65H). The intermediate was hydrolyzed to yield 4-(3-chloropropoxyl)-3-(trifluoromethyl)benzoic acid (59d, 0.223 g, 96%). 1H NMR (500 MHz, CDCl3) δ 8.34 (s, 1H), 8.26 (d, J = 9.0 Hz, 1H), 7.08 (d, J = 8.5 Hz, 1H), 4.31 (t, J = 5.5 Hz, 2H), 3.78 (t, J = 6.0 Hz, 1.65H), 3.64 (t, J = 6.0 Hz, 0.37H), 2.39 (t, J = 6.0 Hz, 0.40H), 2.31 (t, J = 6.0 Hz, 1.66H). Compound 59d (0.100 g, 0.35 mmoL) and 3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)aniline (0.097 g, 0.35 mmoL) were reacted according to general procedure A to afford 63 (0.101 g, yield 53%). 1H NMR (500 MHz, CDCl3) δ 8.48 (s, 1H), 8.06 (s, 1H), 8.03 (d, J = 8.5 Hz, 1H), 7.83 (d, J = 7.0 Hz, 1H), 7.71 (d, J = 8.5 Hz, 1H), 7.01 (d, J = 8.5 Hz, 1H), 4.24 (t, J = 5.0 Hz, 2H), 3.75 (t, J = 6.0 Hz, 2H), 3.58 (s, 2H), 2.47 (m, 8H), 2.28 (m, 5H); 13C NMR (125 MHz, CDCl3) δ 164.6, 159.4, 136.6, 134.0, 133.0, 131.3, 129.2 (q, J = 30.5 Hz), 126.5, 126.3, 124.1 (q, J = 272.6 Hz), 123.7, 123.1 (q, J = 272.6 Hz), 119.0 (q, J = 30.6 Hz), 118.0 (d, J = 5.2 Hz), 112.7, 65.3, 57.8, 55.3, 53.2, 46.1, 41.0, 31.9, 30.4. ESI-HRMS calcd for C24H27O2N3ClF6 [M + H]+ 538.1690; found 538.1681.
4.1.43. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-sulfamoyl-4-(3-chloropropoxy)-benzamide (64)
Compound 64 was synthesized using a method similar to that of 60. Methyl 4-hydroxy-3-(sulfamoyl)benzoate (58e, 0.231 g, 1.00 mmoL) and 1-bromo-3-chloropropane (0.13 mL, 1.36 mmoL) was using as the starting materials to yield the intermediate methyl 4-(3-chloropropoxyl)-3-(trifluoromethyl)benzoate. The intermediate was hydrolyzed to yield 4-(3-chloropropoxyl)-3-(trifluoromethyl)benzoic acid (59e, 0.223 g, 76%). 1H NMR (500 MHz, DMSO‑d 6) δ 8.30 (s, 1H), 8.08 (d, J = 8.5 Hz, 1H), 8.04 (s, 1H), 7.29 (d, J = 8.5 Hz, 1H), 7.10 (s, 2H), 4.30 (s, 2H), 3.85 (s, 2H), 2.28 (s, 2H). Compound 59e (0.100 g, 0.34 mmoL) and 3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl) aniline (0.097 g, 0.35 mmoL) were reacted according to general procedure A to afford 64 (0.093 g, yield 50%). 1H NMR (500 MHz, DMSO‑d 6) δ 10.65 (s, 1H), 8.43 (s, 1H), 8.25 (d, J = 8.0 Hz, 1H), 8.21 (s, 1H), 8.10 (d, J = 7.5 Hz, 1H), 7.71 (d, J = 8.0 Hz, 1H), 7.41 (d, J = 7.5 Hz, 1H), 7.20 (s, 2H), 4.35 (s, 2H), 3.87 (s, 2H), 3.63 (s, 2H), 2.93 (br s, 4H), 2.57 (br s, 4H), 2.30 (s, 2H); 13C NMR (125 MHz, DMSO‑d 6) δ 164.1, 157.8, 138.5, 133.3, 131.3, 127.9, 127.6, 125.6, 123.6, 117.0, 113.1, 65.9, 56.8, 53.2, 50.2, 42.1, 40.0, 31.2. ESI-HRMS calcd for C23H29O4N4F3SCl [M + H]+ 549.1545; found 549.1550.
4.1.44. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-amino-4-(3-chloropropoxy)-benzamide (65)
Compound 60 was hydrogenated according to general procedure B to afford 65. 1H NMR (500 MHz, CDCl3) δ 7.87 (m, 3H), 7.74 (d, J = 8.5 Hz, 1H), 7.27 (d, J = 8.5 Hz, 1H), 7.22 (d, J = 8.5 Hz, 1H), 6.85 (d, J = 8.5 Hz, 1H), 4.23 (t, J = 5.0 Hz, 2H), 3.95 (br s, 2H), 3.743 (t, J = 6.0 Hz, 2H), 3.62 (s, 2H), 2.52 (m, 8H), 2.31 (m, 5H). ESI-HRMS calcd for C23H29O2N4ClF3 [M + H]+ 485.1927; found 485.1923.
4.1.45. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-propionamido-4-(3-chloropropoxy)-benzamide (66)
Acylation of compound 65 afforded 66 according to general procedure C. 1H NMR (500 MHz, CDCl3) δ 8.83 (s, 1H), 8.53 (s, 1H), 7.91 (s, 1H), 7.85 (m, 2H), 7.74 (d, J = 8.5 Hz, 1H), 7.68 (d, J = 8.5 Hz, 1H), 6.96 (d, J = 8.5 Hz, 1H), 4.27 (t, J = 5.0 Hz, 2H), 3.73 (t, J = 6.0 Hz, 2H), 3.61 (s, 2H), 2.52 (m, 8H), 2.42 (m, 2H), 2.33 (m, 5H), 1.24 (t, J = 6.0 Hz, 3H); 13C NMR (125 MHz, CDCl3) δ 172.5, 165.4, 149.8, 137.3, 133.0, 131.3, 129.2 (q, J = 30.6 Hz),127.4, 127.3, 125.1, 124.2(q, J = 271.0 Hz), 123.4, 123.3, 117.9 (d, J = 4.5 Hz), 117.7, 111.2, 66.1, 57.8, 55.0, 52.7, 45.7, 41.4, 31.8, 31.0, 9.6. ESI-HRMS calcd for C26H33O3N4ClF3 [M + H]+ 541.2188; found 541.2174.
Compounds 68–70 were synthesized using a method similar to that of 60.
4.1.46. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-nitro-4-(4-chloroethoxy)-benzamide (68)
Compound 58a (0.20 g, 1.0 mmoL)was reacted with 1-bromo-2-chloroethane (0.125 mL, 1.5 mmoL) and potassium carbonate (0.28 g, 2.0 mmoL) to give methyl 2-chloroethoxy-3-nitrobenzoate (0.181 g, 70%). The compound was hydrolyzed to give 4-(2-chloroethoxy)-3-nitrobenzoic acid (67a, 0.168 g, 98%). 1H NMR (500 MHz, DMSO‑d 6) δ 13.35 (br s, 1H), 8.34 (s, 1H), 8.16 (d, J = 7.5 Hz, 1H), 7.49 (d, J = 7.5 Hz, 1H), 4.54 (m, 2H), 3.98 (m, 2H). Compound 67a (0.15 g, 0.61 mmoL) and 3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)aniline (0.167 g, 0.61 mmoL) were reacted according to general procedure A to afford 68 (0.265 g, yield 87%). 1H NMR (500 MHz, CDCl3) δ 8.36 (d, J = 1.0 Hz, 1H), 8.13 (d, J = 8.5 Hz, 1H), 7.85 (s, 1H), 7.84 (d, J = 9.0 Hz, 1H), 7.76 (d, J = 8.5 Hz, 1H), 7.15 (d, J = 9.0 Hz, 1H), 4.42 (t, J = 6.0 Hz, 2H), 3.87 (t, J = 6.0 Hz, 2H), 3.61 (s, 2H), 2.49 (m, 8H), 2.29 (s, 3H); 13C NMR (100 MHz, CDCl3) δ 163.3, 154.1, 139.4, 136.3, 134.4, 133.8, 131.5, 129.3 (q, J = 30.6 Hz), 127.3, 124.7, 124.2 (q, J = 273.9 Hz), 123.7, 118.1 (d, J = 4.5 Hz), 115.0, 69.9, 57.8, 55.2, 53.2, 46.2, 41.0, 30.4, 29.8. ESI-HRMS calcd for C22H25O4N4ClF3 [M + H]+ 501.1511; found 501.1503.
4.1.47. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-nitro-4-(4-chlorobutoxy)-benzamide (69)
1H NMR (500 MHz, CDCl3) δ 8.37 (s, 1H), 8.13 (d, J = 8.5 Hz, 1H), 8.05 (s, 1H), 7.87 (s, 1H), 7.85 (d, J = 9.0 Hz, 1H), 7.78 (d, J = 8.5 Hz, 1H), 7.17 (d, J = 8.5 Hz, 1H), 4.24 (s, 2H), 3.63 (s, 4H), 2.51 (m, 8H), 2.30 (s, 3H), 2.04 (m, 4H); 13C NMR (150 MHz, CDCl3) δ 163.4, 155.1, 139.3, 136.4, 134.4, 133.8, 131.6, 129.4 (q, J = 30.3 Hz), 126.6, 124.6, 124.2 (q, J = 273.9 Hz), 123.7, 118.0 (d, J = 6.0 Hz), 114.7, 69.4, 57.9, 55.3, 53.2, 46.2, 44.6, 29.0, 26.4. ESI-HRMS calcd for C24H29O4N4ClF3 [M + H]+ 529.1824; found 529.1827.
4.1.48. N-(3-(trifluoromethyl)-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-nitro-4-((5-chloropentyl)oxy)-benzamide (70)
1H NMR (500 MHz, CDCl3) δ 8.37 (s, 1H), 8.12 (m, 2H), 7.85 (d, J = 7.5 Hz, 1H), 7.78 (d, J = 8.5 Hz, 1H), 7.17 (d, J = 8.5 Hz, 1H), 4.20 (t, J = 6.0 Hz, 2H), 3.64 (s, 2H), 3.58 (t, J = 6.0 Hz, 2H), 2.53 (m, 8H), 2.32 (s, 3H), 1.88 (m, 6H); 13C NMR (100 MHz, CDCl3) δ 163.1, 155.1, 139.1, 136.2, 133.8, 131.4, 126.2, 124.4, 123.4, 117.8, 114.5, 69.8, 57.7, 55.1, 52.9, 45.9, 44.7, 32.0, 28.1, 23.2. ESI-HRMS calcd for C25H31O4N4ClF3 [M + H]+ 543.1980; found 543.1981.
4.1.49. N-(3-cyano-4-((4-methylpiperazin-1-yl)methyl)phenyl)-3-nitro-4-(3-chloropropoxy)-benzamide (71)
Compound 59a (0.259 g, 1.00 mmoL) and 3-cyano-4-((4-methylpiperazin-1-yl)methyl)aniline (0.230 g, 1.00 mmoL) were reacted according to general procedure A to afford 71 (0.315 g, yield 67%). 1H NMR (400 MHz, CDCl3) δ 8.50 (s, 1H), 8.44 (d, J = 2.4 Hz, 1H), 8.17 (d, J = 8.8 Hz, 1H), 8.02 (s, 1H), 7.87 (d, J = 8.4 Hz, 1H), 7.50 (d, J = 8.4 Hz, 1H), 7.21 (d, J = 8.8 Hz, 1H), 4.35 (t, J = 5.6 Hz, 2H), 3.80 (t, J = 6.4 Hz, 2H), 3.67 (s, 2H), 2.56 (m, 8H), 2.32 (m, 5H); 13C NMR (100 MHz, CDCl3) δ 163.5, 155.0, 139.1, 138.6, 137.4, 134.1, 131.0, 126.4, 124.9, 124.7, 124.5, 117.6, 114.7, 113.5, 66.3, 60.0, 55.1, 52.7, 45.9, 41.1, 31.8. ESI-HRMS calcd for C23H27O4N5Cl [M + H]+ 472.1746; found 472.1741.
4.1.50. N-(3-(trifluoromethyl)-4-((4-(dimethylamino)piperidin-1-yl)methyl))phenyl)-3-nitro-4-(3-chloropropoxy)-benzamide (72)
Compound 59a (0.259 g, 1.00 mmoL) and 3-(trifluoromethyl)-4-((4-(dimethylamino)piperidin-1-yl)methyl)aniline (83a, 0.302 g, 1.00 mmoL) were reacted according to general procedure A to afford 72 (0.411 g, yield 76%). 1H NMR (400 MHz, CDCl3) δ 8.42 (s, 1H), 8.36 (s, 1H), 8.16 (d, J = 8.8 Hz, 1H), 7.92 (s, 1H), 7.82 (d, J = 8.4 Hz, 1H), 7.78 (d, J = 8.4 Hz, 1H), 7.19 (d, J = 8.8 Hz, 1H), 4.34 (m, 2H), 3.80 (t, J = 6.0 Hz, 2H), 3.59 (s, 2H), 2.87 (m, 2H), 2.30 (m, 8H), 2.18 (m, 1H), 2.04 (m, 2H), 1.79 (m, 2H), 1.54 (m, 2H); 13C NMR (100 MHz, CDCl3) δ 163.4, 154.9, 139.1, 136.3, 134.8, 133.9, 131.3, 129.2 (q, J = 30.1 Hz), 126.8, 124.8, 124.2 (q, J = 272.7 Hz), 123.8, 118.0 (q, J = 5.3 Hz), 114.7, 66.3, 62.4, 57.8, 53.2, 41.8, 41.1, 31.8, 28.6. ESI-HRMS calcd for C25H31O4N4ClF3 [M + H]+ 543.1980; found 543.1965.
4.1.51. N-(3-(trifluoromethyl)-4-((3-dimethylaminopyrrolidin-1-yl)methyl)phenyl)-3-nitro-4-(3-chloropropoxy)-benzamide (73)
Compound 59a (0.259 g, 1.00 mmoL) and 3-(trifluoromethyl)-4-(3-dimethylamino)-pyrrolidin-1-yl)methylaniline (83b, 0.288 g, 1.00 mmoL) were reacted according to general procedure A to afford 73 (0.205 g, yield 39%). 1H NMR (500 MHz, CDCl3) δ 9.12 (br s, 1H), 8.39 (s, 1H), 8.12 (d, J = 9.0 Hz, 1H), 7.88 (s, 1H), 7.82 (d, J = 8.0 Hz, 1H), 7.67 (d, J = 9.5 Hz, 1H), 7.10 (d, J = 9.5 Hz, 1H), 4.27 (t, J = 5.5 Hz, 2H), 3.75 (m, 2H), 3.68 (m, 2H), 2.73 (m, 2H), 2.64 (dd, J = 14.5, 7.5 Hz, 1H), 2.54 (dd, J = 14.5, 7.5 Hz, 1H), 2.41 (t, J = 7.5 Hz, 1H), 2.25 (m, 2H), 2.17 (s, 6H), 1.95 (m, 1H), 1.71 (m, 1H); 13C NMR (100 MHz, CDCl3) δ 163.8, 154.7, 148.9, 138.8, 136.5, 134.6, 133.9, 131.0, 128.4 (q, J = 37.7 Hz), 126.7, 124.1 (q, J = 272.7 Hz), 123.9, 118.1 (d, J = 6.0 Hz), 114.3, 106.8, 66.1, 65.5, 58.4, 55.5, 53.5, 43.8, 41.0, 31.7, 29.3. ESI-HRMS calcd for C24H29O4N4ClF3 [M + H]+ 529.1824; found 529.1812.
4.1.52. N-(3-(trifluoromethyl)-4-((3-dimethylaminoazetidin-1-yl)methyl)phenyl)-3-nitro-4-(3-chloropropoxy)-benzamide (74)
Compound 59a (0.145 g, 0.56 mmoL) and 3-(trifluoromethyl)-4-(3-dimethylamino)azetidin-1-yl)methylaniline (83c, 0.140 g, 0.51 mmoL) were reacted according to general procedure A to afford 74 (0.107 g, yield 41%). 1H NMR (500 MHz, CDCl3) δ 8.39 (d, J = 1.5 Hz, 1H), 8.17 (s, 1H), 8.14 (dd, J = 7.5, 1.5 Hz, 1H), 7.89 (s, 1H), 7.84 (d, J = 7.0 Hz, 1H), 7.65 (d, J = 7.0 Hz, 1H), 7.20 (d, J = 7.0 Hz, 1H), 4.35 (t, J = 4.5 Hz, 2H), 3.80 (m, 3H), 3.55 (t, J = 5.0 Hz, 2H), 2.96 (t, J = 5.5 Hz, 2H), 2.91 (m, 2H), 2.32 (t, J = 5.0 Hz, 2H), 2.12 (s, 6H); 13C NMR (125 MHz, CDCl3) δ 163.2, 154.9, 139.1, 136.3, 133.9, 133.8, 130.6, 128.7, 126.7, 124.7, 123.6, 118.0, 114.7, 66.3, 59.9, 57.0, 42.2, 41.1, 31.8. ESI-HRMS calcd for C23H27O4N4ClF3 [M + H]+ 515.1667; found 515.1665.
4.1.53. 1-(4-(4-(3-chloropropoxy)-3-nitrobenzamido)-2-(trifluoromethyl)benzyl)azetidine-3-carboxylic acid (75)
Compound 59a (0.259 g, 1.00 mmoL) and methyl 1-(4-amino-2-(trifluoromethyl)benzyl)azetidine-3-carboxylate (83d, 0.288 g, 1.00 mmoL) were reacted according to general procedure A to afford methyl ester intermediate (0.238 g, yield 45%). 1H NMR (500 MHz, CDCl3) δ 8.77 (s, 1H), 8.39 (s, 1H), 8.13 (d, J = 7.5 Hz, 1H), 7.88 (s, 1H), 7.80 (d, J = 7.0 Hz, 1H), 7.56 (d, J = 7.0 Hz, 1H), 7.14 (d, J = 7.5 Hz, 1H), 4.31 (s, 2H), 3.78 (s, 2H), 3.71 (m, 5H), 3.53 (m, 2H), 3.35 (m, 3H), 2.28 (m, 2H); 13C NMR (125 MHz, CDCl3) δ 173.8, 163.6, 154.9, 138.8, 136.5, 134.1, 133.1, 130.3, 128.5, (q, J = 29.4 Hz), 126.5, 124.8, 124.0 (q, J = 272.5 Hz), 123.8, 118.2, 66.2, 58.5, 57.1, 52.2, 41.1, 34.2, 31.7. To a solution of the intermediate (0.200 g, 0.38 mmoL) in MeOH/THF (4 mL, 1:1) was added lithium hydroxide (18 mg, 0.76 mmoL). The mixture was stirred for 4 h, the reaction was neutralized by diluted hydrochloric acid to give white solid, then filtering and drying derived product 75 (0.185 g, 96%). 1H NMR (500 MHz, MeOD) δ 8.51 (s, 1H), 8.27 (s, 1H), 8.24 (d, J = 8.5 Hz, 1H), 8.08 (d, J = 9.0 Hz, 1H), 7.67 (d, J = 8.5 Hz, 1H), 7.46 (d, J = 9.0 Hz, 1H), 4.41 (m, 2H), 4.37 (s, 2H), 4.09 (m, 5H), 3.81 (m, 1H), 3.41 (m, 1H), 2.37 (m, 1H), 2.30 (m, 1H); 13C NMR (125 MHz, MeOD) δ 166.1, 155.9, 141.2, 140.9, 134.8, 133.0, 130.5, 126.1, 125.1, 119.6, 118.6, 115.8, 68.7, 67.7, 59.0, 56.9, 41.9, 35.9, 33.0, 30.1. ESI-HRMS calcd for C22H22O6N3ClF3 [M + H]+ 516.1144; found 516.1139.
4.1.54. N-(3-(trifluoromethyl)-4-(morpholinmethyl)phenyl)-3-nitro-4-(3-chloropropoxy)-benzamide (76)
Compound 59a (0.164 g, 0.63 mmoL) and 3-(trifluoromethyl)-4-(morpholinmethyl)aniline (83e, 0.151 g, 0.58 mmoL) were reacted according to general procedure A to afford 76 (0.210 g, yield 72%). 1H NMR (500 MHz, CDCl3) δ 8.38 (d, J = 2.0 Hz, 1H), 8.15 (dd, J = 7.5, 1.5 Hz, 1H), 8.02 (s, 1H), 7.87 (s, 1H), 7.85 (d, J = 7.5 Hz, 1H), 7.80 (d, J = 6.0 Hz, 1H), 7.22 (d, J = 7.5 Hz, 1H), 4.36 (t, J = 5.0 Hz, 2H), 3.81 (t, J = 5.0 Hz, 2H), 3.72 (m, 4H), 2.48 (m, 4H), 2.33 (m, 2H); 13C NMR (125 MHz, CDCl3) δ 163.2, 155.0, 139.2, 136.4, 133.9, 133.8, 131.6, 129.6 (q, J = 30.4 Hz), 126.7, 124.6, 124.1 (q, J = 272.1 Hz), 123.6, 118.0 (d, J = 6.3 Hz), 114.8, 67.2, 66.3, 58.3, 53.7, 41.1, 31.8. ESI-HRMS calcd for C22H24O5N3ClF3 [M + H]+ 502.1351; found 502.1348.
4.1.55. N-(3-(trifluoromethyl)-4-((3,5-dimethylmorpholin)methyl)phenyl)-3-nitro-4-(3-chloropropoxy)-benzamide (77)
Compound 59a (0.164 g, 0.63 mmoL) and 3-(trifluoromethyl)-4-((3,5-dimethylmorpholin)methyl)aniline (83f, 0.185 g, 0.58 mmoL) were reacted according to general procedure A to afford 77 (0.241 g, yield 79%). 1H NMR (600 MHz, CDCl3) δ 8.38 (d, J = 1.8 Hz, 1H), 8.15 (dd, J = 8.0, 1.8 Hz, 1H), 8.03 (s, 1H), 7.86 (m, 2H), 7.85 (d, J = 7.2 Hz, 1H), 7.23 (d, J = 7.2 Hz, 1H), 4.36 (t, J = 6.0 Hz, 2H), 3.81 (t, J = 6.0 Hz, 2H), 3.69 (m, 2H), 3.69 (s, 2H), 2.68 (s, 1H), 2.66 (s, 1H), 2.33 (t, J = 6.0 Hz, 2H), 1.84 (t, J = 9.0 Hz, 2H), 1.15 (d, J = 6.6 Hz, 6H); 13C NMR (150 MHz, CDCl3) δ 163.2, 155.0, 139.2, 136.3, 134.1, 133.8, 131.6, 129.5 (q, J = 30.4 Hz), 126.7, 124.6, 124.1 (q, J = 273.7 Hz), 123.6, 118.0 (d, J = 6.0 Hz), 114.8, 71.9, 66.3, 59.5, 57.9, 41.0, 31.8, 19.2. ESI-HRMS calcd for C24H28O5N3ClF3 [M + H]+ 530.1664; found 530.1662.
4.1.56. N-(2-((4-methylpiperazin-1-yl)methyl)pyridin-3-yl)-3-nitro-4-(3-chloropropoxy)-benzamide (78)
Compound 59a (0.260 g, 1.00 mmoL) and 5-amine- 2-((4-methylpiperazin-1-yl)methylpyridine (86, 0.200 g, 1.00 mmoL) were reacted according to general procedure A to afford 78 (0.205 g, yield 46%).1H NMR (600 MHz, CDCl3) δ 8.65 (d, J = 2.4 Hz, 1H), 8.42 (d, J = 2.4 Hz, 1H), 8.33 (s, 1H), 8.21 (dd, J = 8.4, 2.4 Hz, 1H), 8.16 (dd, J = 8.4, 2.4 Hz, 1H), 7.41 (d, J = 8.4 Hz, 1H), 7.20 (d, J = 9.0 Hz, 1H), 4.35 (d, J = 6.0 Hz, 2H), 3.79 (d, J = 6.0 Hz, 2H), 3.63 (s, 2H), 2.52–2.45 (m, 8H), 2.31 (m, 2H), 2.27 (s, 3H); 13C NMR (150 MHz, CDCl3) δ 163.6, 154.9, 141.3, 139.1, 133.9, 133.2, 128.6, 126.5, 124.8, 123.6, 114.6, 66.3, 64.1, 55.1, 53.4, 46.1, 41.1, 31.7. ESI-HRMS calcd for C21H27O4N5Cl [M + H]+ 448.1746; found 448.1744.
4.1.57. N-(2-(4-methylpiperidin-1-yl)pyridin-5-yl)-3-nitro-4-(3-chloropropoxy)-benzamide (79)
Compound 59a (0.380 g, 1.48 mmoL) and 5-amine- 2-(4-methylpiperidin-1-yl)pyridine (88, 0.260 g, 1.35 mmoL) were reacted according to general procedure A to afford 79 (0.250 g, yield 43%). 1H NMR (600 MHz, CDCl3) δ 8.35 (s, 1H), 8.21 (s, 1H), 8.11 (d, J = 8.4 Hz, 1H), 7.95 (s, 1H), 7.84 (d, J = 7.8 Hz, 1H), 7.15 (d, J = 8.0 Hz, 1H), 6.66 (d, J = 8.0 Hz, 1H), 4.33 (q, J = 5.4 Hz, 2H), 4.20 (d, J = 13.2 Hz, 2H), 3.80 (t, J = 6.0 Hz, 1.5H), 3.66 (t, J = 6.0 Hz, 0.5H), 2.81 (m, 2H), 2.38 (m, 0.5H), 2.31 (m, 1.5H), 1.72 (s, 1H), 1.70 (s, 1H), 1.66 (s, 1H), 1.59 (m, 1H), 1.20 (m, 3H), 0.95 (d, J = 6.6 Hz, 3H); 13C NMR (150 MHz, CDCl3) δ 163.4, 157.6, 154.6, 141.2, 139.4, 133.5, 132.0, 127.2, 124.6, 124.2, 114.6, 107.1, 67.4, 66.4, 46.1, 41.1, 33.9, 31.9, 31.2, 29.5, 22.0. ESI-HRMS calcd for C21H26O4N4Cl [M + H]+ 433.1643; found 433.1625.
4.1.58. N-(3-(trifluoromethyl)-4-((3-dimethylaminoazetidin-1-yl)methyl)phenyl)-3-nitro-4-(2-chloroethoxy)-benzamide (80)
4-(2-chloroethoxyl)-3-nitrobenzoic acid (67a, 0.245 g, 1.00 mmoL) and 3-(trifluoromethyl)-4-(3-dimethylamino)azetidin-1-yl)methylaniline (83c, 0.140 g, 1.00 mmoL) were reacted according to general procedure A to afford 80 (0.335 g, yield 67%). 1H NMR (600 MHz, DMSO‑d 6) δ 10.57 (s, 1H), 8.54 (d, J = 1.8 Hz, 1H), 8.28 (dd, J = 9.0, 1.8 Hz, 1H), 8.16 (s, 1H), 8.03 (d, J = 8.4 Hz, 1H), 7.65 (d, J = 8.4 Hz, 1H), 7.56 (d, J = 9.0 Hz, 1H), 5.75 (s, 1H), 4.56 (t, J = 4.8 Hz, 2H), 4.99 (t, J = 4.8 Hz, 2H), 3.69 (s, 2H), 3.41 (s, 2H), 2.82 (t, J = 4.8 Hz, 2H), 2.00 (s, 6H); 13C NMR (125 MHz, DMSO‑d 6) δ 163.1, 153.1, 139.0, 137.8, 133.8, 132.1, 130.5, 126.7, 124.6, 123.6, 117.3, 115.3, 69.9, 58.9, 58.5, 56.3, 54.9, 42.4, 41.7. ESI-HRMS calcd for C22H25O4N4ClF3 [M + H]+ 501.1511; found 501.1521.
Hydrochloric acid salt of compound 80.
To the solution of compound 80 (0.25 g, 0.5 mmol) in anhydrous methanol (2.0 mL) was added HCl/ethyl acetate (2.0 M, 0.52 mL) at 0 °C and the mixture was stirred for 30 min. The reaction solution was then evaporated in vacuo to provide white solid (0.286 g, 100%). 1H NMR (500 MHz, DMSO‑d 6) δ 12.30 (br s, 1H), 11.76 (br s, 1H), 10.85 (s, 1H), 8.58 (s, 1H), 8.33 (d, J = 8.0 Hz, 1H), 8.32 (s, 1H), 8.18 (d, J = 8.0 Hz, 1H), 7.86 (br s, 1H), 7.58 (d, J = 9.0 Hz, 1H), 4.57 (t, J = 5.0 Hz, 2H), 4.60–4.25 (m, 7H), 3.99 (t, J = 5.0 Hz, 2H), 2.73 (s, 6H).
Synthesis of compound 83a-f.
Taking 83a as an example: To a solution of 1-(bromomethyl)-4-nitro-2-(trifluoromethyl)benzene (81, 0.65 g, 2.3 mmoL) in anhydrous acetronitrile (6.0 mL) was added 4-(dimethylamino)piperidine (0.27 mL, 2.3 mmoL) and potassium carbonate (0.31 g, 2.3 mmoL). The mixture was stirred at 60 °C for 4 h. After cooling to room temperature, the solvent was removed, and the residue was extracted with ethyl acetate, washed with water and brine in turns, and dried over anhydrous Na2SO4. After filtration and concentration, the obtained residue was purified by flash column chromatography ((eluents 1–5% MeOH in dichloromethane with 0.2% NH4OH(aq))) to yield 82a (0.53 g, 70%). The intermediate was hydrogenated according to general procedure B to afford 83a (0.451 g, yield 95%). 1H NMR (500 MHz, CDCl3) δ 7.49 (d, J = 7.5 Hz, 1H), 6.90 (s, 1H), 6.79 (d, J = 7.5 Hz, 1H), 3.75 (s, 2H), 3.49 (s, 2H), 2.88 (d, J = 10 Hz, 2H), 2.34 (m, 6H), 2.18 (m, 1H), 1.97 (m, 2H), 1.78 (m, 2H), 1.54 (m, 2H).
Synthesis of 83b was similar to that of compound 83a: compound 81 (0.50 g, 1.77 mmoL) and 3-dimethylaminopyrrolidine (0.26 mL, 2.12 mmoL) and potassium carbonate (0.24 g, 1.77 mmoL) were reacted to yield 82b (0.431 g, 77%). 1H NMR (500 MHz, CDCl3) δ 8.53 (s, 1H), 8.40 (d, J = 9.0 Hz, 1H), 8.10 (d, J = 9.0 Hz, 1H), 3.89 (m, 2H), 2.86 (m, 1H), 2.74 (m, 3H), 2.55 (m, 1H), 2.25 (s, 6H), 2.04 (m, 1H), 1.83 (m, 1H). The product was hydrogenated according to general procedure B to afford 83b (0.351 g, yield 92%). 1H NMR (500 MHz, CDCl3) δ 7.42 (d, J = 9.0 Hz, 1H), 6.88 (s, 1H), 6.76 (d, J = 9.0 Hz, 1H), 3.62 (m, 2H), 2.85 (m, 1H), 2.71 (m, 1H), 2.58 (m, 2H), 2.45 (m, 1H), 2.22 (s, 6H), 1.96 (m, 1H), 1.74 (m, 1H).
Synthesis of 83c was similar to that of compound 83a: compound 81 (1.55 g, 5.47 mmoL) and 3-(dimethylamino)azetidine dihydrochloride (0.95 g, 5.47 mmoL) were reacted to afford 3-(trifluoromethyl)-4-(3-dimethylamino)azetidin-1-yl)methyl-nitrobenzene (82c, 1.00 g, 60%). 1H NMR (500 MHz, CDCl3) δ 8.44 (s, 1H), 8.32 (d, J = 7.0 Hz, 1H), 7.94 (d, J = 7.0 Hz, 1H), 3.88 (s, 2H), 3.55 (t, J = 6.0 Hz, 2H), 2.99 (t, J = 6.0 Hz, 2H), 2.93 (m, 1H), 2.11 (s, 6H); 13C NMR (125 MHz, CDCl3) δ 146.4, 145.5, 130.8, 129.3 (q, J = 26.6 Hz), 126.5, 123.1 (q, J = 227.3 Hz), 121.4 (q, J = 5.0 Hz), 59.9, 59.0, 56.9, 42.1. The product was hydrogenated according to general procedure B at hydrogen gas pressure of 14 psi for 24 h to afford 83c (0.576 g, yield 65%). 1H NMR (500 MHz, CDCl3) δ 7.32 (d, J = 6.0 Hz, 1H), 6.85 (s, 1H), 6.72 (d, J = 6.0 Hz, 1H), 3.79 (br s, 2H), 3.64 (s, 2H), 3.47 (t, J = 5.0 Hz, 1H), 2.85 (m, 3H), 2.06 (s, 6H); 13C NMR (125 MHz, CDCl3) δ 145.2, 130.9, 128.8 (q, J = 24.7 Hz), 126.3, 124.3 (q, J = 227.1 Hz), 117.7, 112.2 (q, J = 4.9 Hz), 59.6, 58.9, 56.9, 42.0. ESI-HRMS calcd for C13H19N3F3 [M + H]+ 274.1526; found 274.1525.
Synthesis of compound 83d was similar to that of 83a: compound 81 (0.50 g, 1.76 mmoL) and methyl azetidine-3-carboxylate hydrochloride (0.27 g, 1.76 mmoL) were reacted to afford methyl 1-(4-nitro-2-(trifluoromethyl)benzyl)azetidine-3-carboxylate (82e, 0.274 g, 49%). 1H NMR (600 MHz, CDCl3) δ 8.51 (s, 1H), 8.37 (d, J = 8.4 Hz, 1H), 8.11 (d, J = 8.4 Hz, 1H), 3.74 (s, 6H), 2.51 (s, 4H); 13C NMR (150 MHz, CDCl3) δ 146.7, 145.4, 131.7, 130.2, 129.4 (q, J = 32.0 Hz), 126.6, 123.1 (q, J = 272.7 Hz), 121.4 (q, J = 7.2 Hz), 58.6, 57.3, 52.2, 34.1. The product was hydrogenated according to general procedure B to afford 83e (0.158 g, yield 64%). 1H NMR (500 MHz, CDCl3) δ 7.44 (d, J = 7.0 Hz, 1H), 6.93 (d, J = 1.5 Hz, 1H), 6.83 (d, J = 6.5 Hz, 1H), 3.88 (s, 2H), 3.79 (t, J = 7.0 Hz, 2H), 3.71 (s, 3H), 3.58 (t, J = 6.5 Hz, 2H), 3.45 (m, 1H).
Synthesis of compound 83e was similar to that of 83a: compound 81 (0.30 g, 1.16 mmoL) and morpholine (0.11 mL, 1.27 mmoL) were reacted to afford 3-(trifluoromethyl)-4-(morpholinmethyl) -nitrobenzene (82e, 0.260 g, 77%). 1H NMR (600 MHz, CDCl3) δ 8.51 (s, 1H), 8.37 (d, J = 8.4 Hz, 1H), 8.11 (d, J = 8.4 Hz, 1H), 3.74 (s, 6H), 2.51 (s, 4H); 13C NMR (150 MHz, CDCl3) δ 146.7, 145.4, 131.7, 130.1 (q, J = 31.8 Hz), 126.5, 123.2 (q, J = 272.7 Hz), 121.6 (q, J = 6.0 Hz), 67.1, 58.3, 53.8. The product was hydrogenated according to general procedure B to afford 83e (0.150 g, yield 64%). 1H NMR (600 MHz, CDCl3) δ 7.48 (d, J = 8.4 Hz, 1H), 6.92 (s, 1H), 6.78 (dd, J = 8.4, 1.8 Hz, 1H), 3.77 (s, 2H), 3.69 (s, 4H), 3.52 (s, 2H), 2.44 (s, 4H); 13C NMR (150 MHz, CDCl3) δ 145.3, 132.1, 129.7 (q, J = 29.7 Hz), 126.4, 124.5 (q, J = 272.4 Hz), 121.6 (q, J = 6.0 Hz), 67.2, 58.4, 53.7. ESI-HRMS calcd for C12H16N2F3 [M + H]+ 261.1209; found 261.1209.
Synthesis of compound 83f was similar to that of 83a: compound 81 (0.30 g, 1.16 mmoL) and 2,6-dimethylmorpholine (0.14 mL, 1.16 mmoL) were reacted to afford 3-(trifluoromethyl)-4-(3,5-dimethylmorpholin)-nitrobenzene (82f, 0.270 g, 73%). 1H NMR (600 MHz, CDCl3) δ 8.46 (s, 1H), 8.34 (d, J = 8.4 Hz, 1H), 8.09 (d, J = 8.4 Hz, 1H), 3.71 (m, 4H), 2.62 (d, J = 11.4 Hz, 2H), 1.88 (t, J = 10.4 Hz, 2H), 1.12 (d, J = 6.6 Hz, 6H); 13C NMR (150 MHz, CDCl3) δ 146.6, 145.6, 131.7, 129.9 (q, J = 31.9 Hz), 126.5, 123.2 (q, J = 272.7 Hz), 121.4 (q, J = 6.0 Hz), 71.8, 59.5, 57.8, 19.1. The product was hydrogenated according to general procedure B to afford 83f. ESI-HRMS calcd for C14H20ON2F3 [M + H]+ 289.1522; found 289.1522.
Synthesis of compound 86 was similar to that of 83a: 2-(bromomethyl)-5- nitropyridine (84, 0.43 g, 2.0 mmoL) and 4-methylpiperazine (0.22 mL, 2.0 mmoL) were reacted to afford 5-nitro-2-((4-methylpiperazin-1-yl)methylpyridine (85, 0.315 g, 67%). 1H NMR (600 MHz, CDCl3) δ 8.48 (d, J = 2.4 Hz, 1H), 8.37 (dd, J = 8.4, 1.8 Hz, 1H), 7.80 (d, J = 8.4 Hz, 1H), 3.77 (s, 2H), 2.55 (m, 4H), 2.45 (m, 4H), 2.28 (s, 3H); 13C NMR (150 MHz, CDCl3) δ 150.0, 146.9, 130.9, 128.1, 127.2, 115.6, 114.2, 60.0, 55.0, 53.2, 46.0. The product was hydrogenated according to general procedure B to afford 86 which was directly used without further purification.
Synthesis of compound 88 was similar to that of 83a: 2-chloro-5-nitropyridine (0.50 g, 3.16 mmoL) and 4-methylpiperidine (0.37 mL, 3.16 mmoL) were reacted to afford 5-nitro-2-((4-methylpiperidin-1-yl)pyridine (87, 0.607 g, 87%). 1H NMR (500 MHz, CDCl3) δ 9.03 (s, 1H), 8.17 (dd, J = 9.5, 2.5 Hz, 1H), 6.55 (d, J = 9.5 Hz, 1H), 4.49 (d, J = 10.0 Hz, 2H), 3.00 (t, J = 12.5 Hz, 2H), 1.78 (m, 2H), 1.20 (m, 3H), 0.98 (d, J = 6.5 Hz, 3H). The product was hydrogenated according to general procedure B to afford 88 which was directly used without further purification. 1H NMR (500 MHz, CDCl3) δ 7.77 (s, 1H), 6.95 (d, J = 9.0 Hz, 1H), 6.57 (d, J = 9.5 Hz, 1H), 3.99 (d, J = 12.0 Hz, 2H), 2.69 (t, J = 11.5 Hz, 2H), 1.70 (m, 2H), 1.52 (s, 1H), 1.25 (m, 2H), 0.93 (d, J = 6.0 Hz, 3H).
4.2. Biological assay
4.2.1. Cell culture and HCV infection
Human liver cell line Huh7.5 cells and the plasmid pFL-J6/JFH/JC1 containing the full-length chimeric HCV complementary DNA (cDNA) were kindly provided by Vertex Pharmaceuticals Inc. (Boston, USA) Huh7.5 cells were cultured in Dulbecco's modified eagle medium (DMEM, Invitrogen, CA) supplemented with 10% heat-inactivated fetal bovine serum (Invitrogen) and 1% penicillin–streptomycin (Invitrogen). Cells were digested with 0.05% trypsin-ethylene diamine tetraacetic acid (EDTA) and split twice a week. HCV virus stock was prepared and used to infect native Huh7.5 cells at an infective dose of 45 IU/cell as described previously [29].
4.2.2. Agents
Telaprevir (HY-10235, VX-950) was purchased from the MedChemExpress (Princeton, NJ). The pAbs to glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (10494-1-AP) were from Protein Tech Inc. All test compounds were dissolved supplied in DMSO at 10 mM and then diluted in Dulbecco's modified Eagle's medium culture medium. For EC50 and CC50 determinations, test compounds were serially diluted in eight steps of 1:5 dilutions in 96-well plates.
4.2.3. Anti-HCV activity assay in vitro [37]
Huh7.5 cells were seeded into 96-well or 6-well plates (Costar) at a density of 3 × 104 cells/cm2. After 24 h of incubation, the cells were infected with HCV viral stock (recombination virus strain J6/JFH/JC, 45 IU/cell) and simultaneously treated with different concentration of compounds or solvent control. The culture medium was removed after 72 h of incubation, and the intracellular total RNA (in 96-well plates) was extracted with RNeasy Mini Kit (Qiagen) and quantified with qRT-PCR. It was performed on a 7500 Fast Real-Time PCR system (Applied Biosystems, Singapore) using an AgPath-ID One-Step RT-PCR Kit (Applied Biosystems, Foster, CA, USA) according to the manufacturer's instructions. All quantifications were normalized to the level of the internal control gene, glyceraldehyde 3-phosphate dehydrogenase (GAPDH), the levels of HCV RNA were analyzed with the 2-△△CT method, and a value of half maximal effective concentration (EC50) was calculated with the Reed-Muench Method.
4.2.4. Cytotoxicity assay
Huh7.5 cells were seeded into 96-well plates (Costar) at a density of 3.0 × 104 cells/cm2. After 24 h of incubation, fresh culture medium containing test compounds at various concentrations were added. Cytotoxicity was evaluated with the tetrazolium-based MTT assay at 96 h.
4.2.5. Aqueous solubility determination of compound 80 and its hydrochloride salt
Hydrochloride salts of compound 80 were added to distilled water (1.0 mL). After shaking for 1.0 h at 25 °C and then centrifuging at 3000 rpm for 10 min, the saturated supernatants were measured the volume and then lyophilized to determine the concentration dissolved in water. For compound 80, the saturated supernatants were transferred to other vials for analysis by HPLC-UV. Each sample was performed in triplicate. For quantification, a model 1200 HPLC-UV (Agilent) system was used with an Agilent TC-C18 column (250 × 4.6 mm, 5 μm) and elution of 2 mM HCO2NH4/methanol-water (95:5). The flow rate was 1.0 mL/min and injection volume was 10 μL with the detection wavelength at 254 nm. Aqueous concentration was determined by comparison of the peak area of the saturated solution with a standard curve plotted peak area versus known concentrations, which were prepared by solutions of test compound in methanol at 135.0, 45.0, 15.0, 5.0, and 2.5 μg/mL.
In vivo toxicity, In vitro and In vivo pharmacokinetic, and Compounds protecting hA3G from Vif-mediated degradation assessment methods. See supporting information. All in vivo studies were in accordance with the Animal Care and Use Committee of People's Republic of China.
Declaration of competing interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Acknowledgements
This work was supported by the CAMS Innovation Fund for Medical Sciences (2017-I2M-3-012).
Footnotes
Supplementary data to this article can be found online at https://doi.org/10.1016/j.ejmech.2021.114033.
Abbreviations Used
- EDCI
N-ethyl-N'-(3-dimethylaminopropyl)carbodiimide hydrochloride
- DMAP
4-dimethylaminopyridine
- TEA
triethylamine
- THF
tetrahydrofuran
- DEAD
diethylazodicarboxylate
- PPh3
triphenylphosphine
- MeOH
methanol
- DMF
dimethyl formamide
- rt
room temperature
- EtOAc
ethyl acetate
- NBS
N-bromosuccinimide
- AIBN
azobisisobutyronitrile
- qRT-PCR
real-time quantitative reverse-transcription polymerase chain reaction
- MTT
3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium
- ip
intraperitoneal
- NMR
nuclear magnetic resonance
- TMS
trimethylsilance
- HRMS
high resolution mass spectrometry
- min
minutes
- h
hours
Appendix A. Supplementary data
The following is the Supplementary data to this article:
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