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. 2021 Dec 1;109(23):3810–3822.e9. doi: 10.1016/j.neuron.2021.09.003
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-NeuN Antibody, clone A60 Sigma-Aldrich RRID: AB_2298772
Donkey anti-Mouse IgG Secondary Antibody Thermo-Fisher RRID: AB_2762830

Bacterial and virus strains

AAV1-EF1a-doublefloxed-hChR2(H134R)-EYFP-WPRE-HGHpA unpublished RRID: Addgene_20298
AAV1-hSyn1-SIO-stGtACR2-FusionRed Mahn et al., 2018 RRID: Addgene_105677
AAV1-Syn-Flex-GCaMP6f-WPRE-SV40 Chen et al., 2013 RRID: Addgene_100833
AAV1-hSyn-DIO-hM4D(Gi)-mCherry Krashes et al., 2011 RRID: Addgene_44362
AAV1-EF1a-FLEX-EGFP SWC Viral Vector Core N/A
AAV1-EF1a-FLEX-mCherry SWC Viral Vector Core N/A
AAVretro-hSyn-Cre SWC Viral Vector Core N/A

Chemicals, peptides, and recombinant proteins

DiI Thermo-Fisher Cat# D3911
CNO Sigma Aldrich Cat# SML2304
Picrotoxin Bio-Techne Cat# 1128
Kynurenic acid Sigma Aldrich Cat# K3375

Experimental models: Organisms/strains

Slc32a1tm2(cre)Lowl The Jackson Laboratory RRID: IMSR_JAX:028862
C57BL/6J Charles River RRID: IMSR_CRL:27
Ai14D The Jackson Laboratory RRID: IMSR_JAX:007914

Software and algorithms

MATLAB R2017a The MathWorks Inc. https://uk.mathworks.com/products/matlab.html; RRID: SCR_001622
Psychophysics Toolbox Version 3 Brainard, 1997; Pelli, 1997; Kleiner et al., 2007 http://psychtoolbox.org; RRID: SCR_002881
ScanImage Pologruto et al., 2003 Vidrio Technologies, LLC; RRID: SCR_014307
Kilosort2 Pachitariu et al., 2016 https://github.com/MouseLand/Kilosort; RRID: SCR_016422
Phy Rossant et al., 2016 https://github.com/cortex-lab/phy
DeepLabCut Mathis et al., 2018 https://github.com/DeepLabCut/DeepLabCut
SpikeGLX Janelia Research Campus https://github.com/billkarsh/SpikeGLX
PyPhotometry Akam and Walton, 2019 https://pyphotometry.readthedocs.io/en/latest/
Mantis TANDM Solutions Limited https://www.mantis64.com/