Fig. 14.
Phylogenetic tree generated from maximum likelihood (ML) analysis based on combined LSU and ITS sequence data for the species from Acrocalymmaceae. Boeremia exigua (CBS 431.74) and Boeremia foveata (CBS 341.67) are used as the outgroup taxa. The dataset comprised 1997 characters after alignment including gaps (LSU = 1308 bp and ITS = 689 bp). The RAxML analysis of the combined dataset yielded a best scoring tree with a final ML optimization likelihood value of − 4737.006546. The matrix had 316 distinct alignment patterns, with 31.82% of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.245559, C = 0.218996, G = 0.276710, T = 0.258736; substitution rates: AC = 1.502433, AG = 1.688434, AT = 1.833814, CG = 0.473416, CT = 4.863789, GT = 1.000000; gamma distribution shape parameter α = 0.020000. The MP analysis resulted a single most parsimonious tree (TL = 391, CI = 0.831, RI = 0.875, RC = 0.727, HI = 0.169). Bootstrap support values for MLBS and MPBS equal to or greater than 75% BYPP equal to or greater than 0.95 are given above the nodes. Ex-type strains are in bold and newly generated sequence is in blue
