Table 6. Summary of percent identity between contigs and cDNA reference transcripts for the alignments represented in Fig 8 based on simulated data.
Species | Source | Min. % identity | Median % identity | Mean % identity | Max. % identity | No. of cDNA transcripts matched | % of total cDNA transcripts |
---|---|---|---|---|---|---|---|
Whole adult 1 | CStone | 71.6670 | 99.7850 | 99.4143 | 100 | 21915 | 82.14 |
rnaSPAdes | 71.9070 | 99.6770 | 99.4088 | 100 | 25739 | 96.47 | |
Trinity | 71.9070 | 99.6760 | 99.4120 | 100 | 25523 | 95.66 | |
Whole adult 2 | CStone | 70.8950 | 99.7640 | 99.4033 | 100 | 22261 | 81.18 |
rnaSPAdes | 71.5970 | 99.6650 | 99.3990 | 100 | 25946 | 94.62 | |
Trinity | 71.5970 | 99.6640 | 99.4050 | 100 | 25671 | 93.62 |