Table 2.
Binding energy and interacting residues during the inhibition of hMAO-A and hMAO-B by isoliquiritigenin and reference ligands.
Ligands | Binding energya | Interacting residuesb | |
---|---|---|---|
H-bond | Hydrophobic | ||
hMAO-A (2BXR) | |||
Isoliquiritigenin (catalytic) | − 7.44 | FAD600, Thr336, Tyr444 | Ile335 (Pi-Sigma), Leu337 (Pi-Sigma), Phe208 (Pi-Pi Stacked), Tyr407 (Pi-Pi T-shaped) |
HRMc (Harmine) | − 6.46 | FAD600 | Tyr444 (Pi-Sigma), FAD600 (Pi-Sigma, Pi-Pi T-shaped, Pi-Alkyl), Tyr444 (Pi-Pi Stacked), Phe352 (Pi-Pi T-shaped), Tyr407 (Pi-Alkyl), Ile335 (Pi-Alkyl) |
hMAO-B (2V60) | |||
Isoliquiritigenin (catalytic) | − 8.69 | Cys172, FAD1502, Ile199, Tyr398 | Ile199 (Pi-Sigma), Ile171 (Pi-Sigma), Tyr398 (Pi-Pi Stacked), Cys172 (Pi-Sulfur) |
Isoloquilitigenin (allosteric) | − 8.03 | Pro104, His115, Asn116, Asp123 | Arg120 (Pi-Alkyl), Val106 (Pi-Alkyl), Trp119 (Pi-Pi Stacked) |
Safinamided | − 9.45 | Ile199, Cys172, Pro102 | FAD1502 (Halogen: Fluorine), Tyr398 (Pi-Pi Stacked), Tyr435 (Pi-Pi Stacked), Tyr326 (Pi-Pi T-shaped), Leu171 (Pi-Sigma), Cys172 (Pi-Sulfur) |
C17e | − 10.60 | FAD1502, Ile198 | FAD1502 (Pi-Sigma), Tyr398 (Pi-Pi Stacked), Tyr435 (Pi-Pi Stacked), Tyr326 (Pi-Pi T-shaped), Leu171 (Pi-Sigma, Pi-Alkyl, Alkyl), Ile199 (Pi-Sigma, Alkyl), Leu167 (Alkyl), Phe168 (Pi-Alkyl), Cys172 (Pi-Sulfur) |
aThe estimated binding energy (kcal/mol), which signifies the binding affinity of a ligand to the active site of hMAO-A and hMAO-B.
bThe interacting amino acid residues in the ligand-enzyme complex were determined using the AutoDock 4.2 program.
cHarmine, reference ligand; 7-methoxy-1-methyl-9H-pyrido[3,4-b]indole.
dSafinamide, reference reversible hMAO-B inhibitor; (2S)-2-[[4-[(3-fluorophenyl)methoxy]phenyl]methylamino]propenamide.
eC17, reference ligand; N7-[(3-chlorophenyl)methoxy]-2-oxochromene-4-carbaldehyde.