TABLE 2.
Presence/absence of virus strains and variants in the H. parviporum isolates included in the RNA-Seq library.
| Strain | HetNlV1a | HetOlV1b | HetAlV1 | HetAlV2c | HetAlV3d | HetAlV4 | HetRV6e | HetMV3f | HetPV2 | HetPV4 | HetPV13 | HetPV16 | HetPV21 |
| RKU3.1.25 | – | – | – | pa1-ag | pa1-ag | pa1g | pa11-b | – | – | – | – | – | – |
| RKU3.2.124 | – | pa1-ag | – | – | – | – | pa10-b | – | – | – | – | – | pa1g |
| RKU3.3.34 | – | pa1-b | – | – | – | – | pa33 | – | – | – | – | – | – |
| RKU172 | pa1g | pa2 | – | – | (pa1-b) | – | pa34 | pa4 | – | – | – | – | – |
| RT3.45 | – | pa1-c | – | – | – | – | pa11-a | – | – | – | – | – | – |
| 3R4 | pa2 | pa3 | – | pa1-b | pa1-c | – | pa35-a | pa1-4 | – | – | – | – | – |
| 4R1 | – | pa4 | pa1-ag | – | (pa2-a) | – | pa35-b | (pa5) | – | – | – | – | – |
| LAP3.3.2*5 | – | – | – | pa1-c | – | – | [pa32] | – | [pa1] | pa1 | an1 | [an1] | – |
a96.9% nt level identity.
bStrains 96.3–97.1% nt level identity, variants ≥99.5% nt level identity.
cVariants ≥98.1% nt level identity.
dStrains 97.1–97.5% nt level identity, variants ≥99.0% nt level identity.
eStrains 96.0–97.3% nt level identity, variants ≥99.7% nt level identity.
fStrains 93.7–94.6% nt level identity, variants ≥98.7% nt level identity.
gThe virus strain deposited to GenBank. The abbreviation indicates the viral species (e.g., HetNlV1), while suffixes indicate strains (e.g., pa1, pa11), followed by sequence variants (a, b, c or 1, 2, 3 etc.). Brackets represent virus strains/variant not found present in the RNA-Seq library (probably due to inadequate read depth); square brackets represent virus strains confirmed to be absent from the host.
pa = virus strain/variant originating from H. parviporum isolate; an = virus strains originating from H. annosum isolate.