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. 2021 Nov 24;9:761709. doi: 10.3389/fcell.2021.761709

TABLE 1.

Summary to enhance the efficiency of CRISPR-mediated genome and epigenome editing.

Sr. no Recommendation/Strategy
1 GC content of designed sgRNA must range from >30% to <70%
2 Target promoter region rather than exon or intron for gene disruption (if possible)
3 Prefer purine-rich spacer sequences (if possible)
4 Existence of secondary structure in sgRNA improves its processing and genome-editing capability
5 Truncating gRNA or adding extra guanines at its 5′end increases its specificity
6 Stabilize the gRNA with G-quadruplexe structure
7 Eliminate seed regions with UUU sequence
8 Chemically modify the gRNA
9 Substitute one of the nucleotides in the continuous stretch of four to six
10 Avoid constitutively higher expression level of sgRNA and Cas9 to prevent off-targeting
11 Select appropriate method to deliver CRISPR components
12 Avoid targeting heterochromatin region (if possible)
13 Inhibit NHEJ or stimulate HDR to increase the knock-in efficiency of transgene
14 Select appropriate type of donor-template and DNA-repair pathway
15 Use SpCas9MT-pDBD, paired nickase-Cas9 or dCas9-FokI to increase specificity
16 Prefer PAM-out orientation over PAM-in and D10A mutant over H840A
17 Use dead-guide or dead-Cas9 for epigenome editing
18 Recruit multiple activators by using modified guide and dCas9; combining dCas9 system with multipeptide array like SunTag; or using tripartite system to increase the efficiency of CRISPR activation
19 Modify dCas9 or sgRNA to recruit epigenetic modifiers at the target site