TABLE 1.
Summary to enhance the efficiency of CRISPR-mediated genome and epigenome editing.
| Sr. no | Recommendation/Strategy |
|---|---|
| 1 | GC content of designed sgRNA must range from >30% to <70% |
| 2 | Target promoter region rather than exon or intron for gene disruption (if possible) |
| 3 | Prefer purine-rich spacer sequences (if possible) |
| 4 | Existence of secondary structure in sgRNA improves its processing and genome-editing capability |
| 5 | Truncating gRNA or adding extra guanines at its 5′end increases its specificity |
| 6 | Stabilize the gRNA with G-quadruplexe structure |
| 7 | Eliminate seed regions with UUU sequence |
| 8 | Chemically modify the gRNA |
| 9 | Substitute one of the nucleotides in the continuous stretch of four to six |
| 10 | Avoid constitutively higher expression level of sgRNA and Cas9 to prevent off-targeting |
| 11 | Select appropriate method to deliver CRISPR components |
| 12 | Avoid targeting heterochromatin region (if possible) |
| 13 | Inhibit NHEJ or stimulate HDR to increase the knock-in efficiency of transgene |
| 14 | Select appropriate type of donor-template and DNA-repair pathway |
| 15 | Use SpCas9MT-pDBD, paired nickase-Cas9 or dCas9-FokI to increase specificity |
| 16 | Prefer PAM-out orientation over PAM-in and D10A mutant over H840A |
| 17 | Use dead-guide or dead-Cas9 for epigenome editing |
| 18 | Recruit multiple activators by using modified guide and dCas9; combining dCas9 system with multipeptide array like SunTag; or using tripartite system to increase the efficiency of CRISPR activation |
| 19 | Modify dCas9 or sgRNA to recruit epigenetic modifiers at the target site |