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. 2021 Summer;20(3):254–270. doi: 10.22037/ijpr.2021.114536.14901

Table 5.

Docking parameters of designed derivatives of Azetidine-2-carbonitriles, template, and chloroquine standard in the active site of PfDHODH protein

Compound No. MolDock Score (kcal/mol) No. of H-Bonds Amino acid involved Atom of ligands H-bond length (Å)
D1 -128.8790 2 Lys305 O of NO2 2.48
Asp204 H of OH 2.14
D2 -150.8650 11 Lys543 O of OH 2.75
Lys543 O of OH 2.76
Ser202 H of OH 2.14
Leu302 H of Amide 2.49
Lys239 O of N-propylacetamide 2.71
Leu302 N of CN 2.65
Asp200 H of CH2 of hydroxyl methyl 3.00
Ser202 H of CH2 of hydroxyl methyl 2.64
H O 2.41
Asp204 H of Azetidine ring 2.83
Leu302 H of N-propylacetamide 2.89
D3 -128.8700 3 Asp200 H of OH 1.74
Lys239 O of OH 2.84
Asp200 H of the CH2 of hydroxymethyl 2.54
D4 -133.4450 3 Lys305 O of N-propylacetamide 2.42
Asp204 H of OH 2.13
Thr201 O of NO2 2.83
D5 -122.6040 5 Lys305 O of N-propylacetamide 2.33
Asp204 H of OH 2.17
Thr201 O of NO2 2.46
Thr201 O of NO2 3.08
Asp204 H of the CH2 of hydroxymethyl 2.79
D6 -139.4120 4 Leu238 H of OH 2.46
Ile206 O of NO2 2.67
Asp200 H of the CH2 of hydroxymethyl 2.10
Asp200 H of Azetidine ring 2.55
D7 -140.8770 3 Leu238 H of OH 2.38
Asp200 H of the CH2 of hydroxymethyl 2.20
Asp200 H of Azetidine ring 2.32
D8 -124.5920 6 Lys239 O of NO2 2.46
Lys305 O of N-propylacetamide 2.69
Lys305 O of N-propylacetamide 2.55
Asp204 H of OH 1.64
H O of OH 3.09
Ile218 H of the CH2 of hydroxymethyl 2.96
D9 -177.0910 4 Met536 O of NO2 2.28
Ser477 H of the CH2 of hydroxymethyl 1.76
Gly535 O of NO2 2.70
Ala225 H of N-propylacetamide 2.60
D10 -164.6990 7 Lys559 O of NO2 2.36
Leu238 H of OH 2.10
Asp200 H of Amide 2.02
Asp216 O of NO2 2.90
Asp200 H of the CH2 of hydroxylmethyl 2.56
Lys239 H of the CH2 of hydroxylmethyl 2.96
Asp200 H of Azetidine ring 2.38
D11 -125.9140 4 Asn195 O of NO2 2.44
Lys239 O of NO2 1.97
Lys305 O of N-propylacetamide 2.35
Asp204 H of OH 2.20
D12 -150.2670 6 Lys305 O of Oxydibenzene 2.71
Lys239 H of OH 2.14
Asp200 H of Amide 2.08
Leu238 H of the CH2 of hydroxymethyl 2.88
Asp200 H of Azetidine ring 2.10
H O of OH 2.80
D13 -146.0110 4 Asp200 H of OH 1.75
Leu302 N of CN 2.73
Ser202 H of the CH2 of hydroxymethyl 2.25
Asp204 H of Azetidine ring 2.90
D14 -137.2260 7 Thr201 H of OH 1.97
His306 H of Amide 2.59
Asn203 O of OH 2.91
H of CH2 of hydroxymethyl O of N-propylacetamide 2.62
Ser202 H of Azetidine ring 2.88
Leu302 O of N-propylacetamide 2.85
Asp204 H of a delocalized benzene ring 2.99
D15 -158.7300 6 Leu238 H of OH 2.09
Asp200 H of Amide 2.14
Gly241 O of OH 2.43
Asp200 H of the CH2 of hydroxymethyl 2.45
Lys239 H of the CH2 of hydroxymethyl 2.89
Asp200 H of Azetidine ring 2.42
D16 -134.8030 3 Lys239 O of NO2 1.89
Lys305 O of N-propylacetamide 2.48
Asp204 H of OH 2.13
Template -120.2690 3 Lys305 O of N-propylacetamide 2.56
Asp204 H of OH 2.17
Asp204 H of the CH2 of hydroxymethyl 2.97
Chloroquine -140.3940 2 His185 N of Quinoline ring 1.54
Val532 H of amine 2.67