Table 5.
Docking parameters of designed derivatives of Azetidine-2-carbonitriles, template, and chloroquine standard in the active site of PfDHODH protein
Compound No. | MolDock Score (kcal/mol) | No. of H-Bonds | Amino acid involved | Atom of ligands | H-bond length (Å) |
---|---|---|---|---|---|
D1 | -128.8790 | 2 | Lys305 | O of NO2 | 2.48 |
Asp204 | H of OH | 2.14 | |||
D2 | -150.8650 | 11 | Lys543 | O of OH | 2.75 |
Lys543 | O of OH | 2.76 | |||
Ser202 | H of OH | 2.14 | |||
Leu302 | H of Amide | 2.49 | |||
Lys239 | O of N-propylacetamide | 2.71 | |||
Leu302 | N of CN | 2.65 | |||
Asp200 | H of CH2 of hydroxyl methyl | 3.00 | |||
Ser202 | H of CH2 of hydroxyl methyl | 2.64 | |||
H | O | 2.41 | |||
Asp204 | H of Azetidine ring | 2.83 | |||
Leu302 | H of N-propylacetamide | 2.89 | |||
D3 | -128.8700 | 3 | Asp200 | H of OH | 1.74 |
Lys239 | O of OH | 2.84 | |||
Asp200 | H of the CH2 of hydroxymethyl | 2.54 | |||
D4 | -133.4450 | 3 | Lys305 | O of N-propylacetamide | 2.42 |
Asp204 | H of OH | 2.13 | |||
Thr201 | O of NO2 | 2.83 | |||
D5 | -122.6040 | 5 | Lys305 | O of N-propylacetamide | 2.33 |
Asp204 | H of OH | 2.17 | |||
Thr201 | O of NO2 | 2.46 | |||
Thr201 | O of NO2 | 3.08 | |||
Asp204 | H of the CH2 of hydroxymethyl | 2.79 | |||
D6 | -139.4120 | 4 | Leu238 | H of OH | 2.46 |
Ile206 | O of NO2 | 2.67 | |||
Asp200 | H of the CH2 of hydroxymethyl | 2.10 | |||
Asp200 | H of Azetidine ring | 2.55 | |||
D7 | -140.8770 | 3 | Leu238 | H of OH | 2.38 |
Asp200 | H of the CH2 of hydroxymethyl | 2.20 | |||
Asp200 | H of Azetidine ring | 2.32 | |||
D8 | -124.5920 | 6 | Lys239 | O of NO2 | 2.46 |
Lys305 | O of N-propylacetamide | 2.69 | |||
Lys305 | O of N-propylacetamide | 2.55 | |||
Asp204 | H of OH | 1.64 | |||
H | O of OH | 3.09 | |||
Ile218 | H of the CH2 of hydroxymethyl | 2.96 | |||
D9 | -177.0910 | 4 | Met536 | O of NO2 | 2.28 |
Ser477 | H of the CH2 of hydroxymethyl | 1.76 | |||
Gly535 | O of NO2 | 2.70 | |||
Ala225 | H of N-propylacetamide | 2.60 | |||
D10 | -164.6990 | 7 | Lys559 | O of NO2 | 2.36 |
Leu238 | H of OH | 2.10 | |||
Asp200 | H of Amide | 2.02 | |||
Asp216 | O of NO2 | 2.90 | |||
Asp200 | H of the CH2 of hydroxylmethyl | 2.56 | |||
Lys239 | H of the CH2 of hydroxylmethyl | 2.96 | |||
Asp200 | H of Azetidine ring | 2.38 | |||
D11 | -125.9140 | 4 | Asn195 | O of NO2 | 2.44 |
Lys239 | O of NO2 | 1.97 | |||
Lys305 | O of N-propylacetamide | 2.35 | |||
Asp204 | H of OH | 2.20 | |||
D12 | -150.2670 | 6 | Lys305 | O of Oxydibenzene | 2.71 |
Lys239 | H of OH | 2.14 | |||
Asp200 | H of Amide | 2.08 | |||
Leu238 | H of the CH2 of hydroxymethyl | 2.88 | |||
Asp200 | H of Azetidine ring | 2.10 | |||
H | O of OH | 2.80 | |||
D13 | -146.0110 | 4 | Asp200 | H of OH | 1.75 |
Leu302 | N of CN | 2.73 | |||
Ser202 | H of the CH2 of hydroxymethyl | 2.25 | |||
Asp204 | H of Azetidine ring | 2.90 | |||
D14 | -137.2260 | 7 | Thr201 | H of OH | 1.97 |
His306 | H of Amide | 2.59 | |||
Asn203 | O of OH | 2.91 | |||
H of CH2 of hydroxymethyl | O of N-propylacetamide | 2.62 | |||
Ser202 | H of Azetidine ring | 2.88 | |||
Leu302 | O of N-propylacetamide | 2.85 | |||
Asp204 | H of a delocalized benzene ring | 2.99 | |||
D15 | -158.7300 | 6 | Leu238 | H of OH | 2.09 |
Asp200 | H of Amide | 2.14 | |||
Gly241 | O of OH | 2.43 | |||
Asp200 | H of the CH2 of hydroxymethyl | 2.45 | |||
Lys239 | H of the CH2 of hydroxymethyl | 2.89 | |||
Asp200 | H of Azetidine ring | 2.42 | |||
D16 | -134.8030 | 3 | Lys239 | O of NO2 | 1.89 |
Lys305 | O of N-propylacetamide | 2.48 | |||
Asp204 | H of OH | 2.13 | |||
Template | -120.2690 | 3 | Lys305 | O of N-propylacetamide | 2.56 |
Asp204 | H of OH | 2.17 | |||
Asp204 | H of the CH2 of hydroxymethyl | 2.97 | |||
Chloroquine | -140.3940 | 2 | His185 | N of Quinoline ring | 1.54 |
Val532 | H of amine | 2.67 |