Table 3.
AutoDock 4.2 validation results for different holo PDB structures of intended CNS targets
| Drug/No. | PDB ID |
Resolution of
PDB structure (Å) |
Number of GA runs | No. of conformationsin top-ranked cluster |
Maximum
No. of energy eval. |
RMSD from Reference (Å) |
|---|---|---|---|---|---|---|
| Citalopram | ||||||
| 1 | 5I6X | 3.14 | 50 | 49 | 2.5 × 106 | 1.58 |
| 2 | 5I71 | 3.15 | 50 | 49 | 2.5 × 106 | 0.90 |
| 3 | 5I73 | 3.24 | 50 | 50 | 2.5 × 106 | 0.82 |
| Donepezil | ||||||
| 1 | 4M0E | 2.00 | 50 | 50 | 2.5 × 106 | 0.55 |
| 2 | 5HF9 | 2.20 | 50 | 50 | 2.5 × 106 | 1.92 |
| 3 | 4EY7 | 2.35 | 50 | 47 | 2.5 × 106 | 0.46 |