Table 1.
Downregulated miRNAs contain m6A consensus sequences.
Cells | |||||
---|---|---|---|---|---|
miRNA | Read Base Mean | Sequence | FC | P-value | Adjusted P-value |
miR-125b-5p | 360.877 | UCCCUGAGACCCUAACUUGUGA | -1.7 | 5.07E-09 | 2.91E-06 |
miR-100-5p | 1252.25 | AACCCGUAGAUCCGAACUUGUG | -1.7 | 3.7E-08 | 1.06E-05 |
let-7e-5p | 410.781 | UGAGGUAGGAGGUUGUAUAGUUgaggaggaca | -1.3 | 1.91E-06 | 0.00036 |
miR-4521 | 114.646 | GCUAAGGAAGUCCUGUGCUCAGuuuuguagcaucaaaacu | -1.0 | 6.32E-05 | 0.008 |
miR-142-5p | 121.025 | CAUAAAGUAGAAAGCACUACU | -1.2 | 7.13E-05 | 0.008 |
miR-146a-5p | 149.772 | UGAGAACUGAAUUCCAUGGGUU | -1.0 | 9.86E-05 | 0.009 |
miR-99b-5p | 844.702 | CACCCGUAGAACCGACCUUGCG | -1.2 | 0.00017868 | 0.015 |
miR-125a-5p | 1040.74 | UCCCUGAGACCCUUUAACCUGUGA | -1.0 | 0.00045275 | 0.026 |
miR-135b-5p | 127.410 | UAUGGCUUUUCAUUCCUAUGUGAuugcugucccaaacu | -1.1 | 0.00238943 | 0.099 |
miR-32-5p |
241.298 |
UAUUGCACAUUACUAAGUUGCA |
-1.0 |
0.0222186 |
0.308 |
EVs | |||||
miRNA |
Expression Level |
Sequence |
FC |
P-value |
Adjusted P-value |
miR-100-5p | 1252.25 | AACCCGUAGAUCCGAACUUGUG | -1.5 | 1.09E-06 | 0.00074 |
miR-99b-5p | 844.702 | CACCCGUAGAACCGACCUUGCG | -1.4 | 1.07E-05 | 0.003 |
miR-193b-3p | 582.185 | AACUGGCCCUCAAAGUCCCGCU | -1.0 | 1.39E-05 | 0.003 |
miR-125b-5p | 360.877 | UCCCUGAGACCCUAACUUGUGA | -1.2 | 7.31E-05 | 0.001 |
let-7e-5p | 410.781 | UGAGGUAGGAGGUUGUAUAGUUgaggaggaca | -1.1 | 0.00014876 | 0.011 |
miR-125a-5p | 1040.74 | UCCCUGAGACCCUUUAACCUGUGA | -1.2 | 0.00020023 | 0.013 |
miR-224-5p | 1469.11 | UCAAGUCACUAGUGGUUCCGUUUAG | -1.0 | 0.00274813 | 0.098 |
Downregulated miRNAs in METTL3 knockdown cells and EVs compared to DKO-1 cells and EVs. Expression levels (Read Base Mean) are the average number of RNAseq reads from 3 independent libraries. The sequence of downregulated miRNAs is shown along with the log2 fold change (FC), p-values, and adjusted p-values when comparing cell and EV levels between METTL3 knockdown cells and control DKO-1 cells after DESeq2 normalization. Highlighted in red are the m6A consensus sequences present in the mature miRNA sequence (upper case) or the immediately adjacent loop sequence in the pre-miRNA.