Table 3.
Characteristics of Closely Related Isolate Pairs
| SNPs, No. | Epidemiological Classification | ||||||
|---|---|---|---|---|---|---|---|
| Isolate 1 | Isolate 2 | WG | CG | State (Isolate 1:Isolate 2) | Isolate 1 | Isolate 2 | MLST |
| M2016019781 | M2016019870 | 0 | 0 | NY: NY | HO | LTCO | 1a |
| M2016019706 | M2016019715 | 1 | 0 | NY: NY | HO | HO | 17a |
| M2016019446 | M2016019861 | 2 | 0 | NY: NY | CA | CO-HCFA | 1 |
| M2016019464 | M2016019736 | 3 | 0 | NY: NY | HO | LTCO | 1a |
| M2016019615 | M2016019709 | 3 | 0 | NY: NY | CO-HCFA | CA | 46 |
| M2016019615 | M2016019822 | 3 | 0 | NY: NY | CO-HCFA | CO-HCFA | 46a |
| M2016019453 | M2016019779 | 4 | 0 | NY: NY | HO | LTCO | 37 |
| M2016019458 | M2016019615 | 4 | 0 | NY: NY | CA | CO-HCFA | 46 |
| M2016019706 | M2016019902 | 4 | 0 | NY: NY | HO | HO | 17a |
| M2016019762 | M2016019849 | 4 | 0 | NY: NY | CA | CA | 1 |
| M2016019764 | M2016019773 | 4 | 0 | NY: NY | CO-HCFA | CA | 58 |
| M2016019458 | M2016019709 | 5 | 0 | NY: NY | CA | CA | 46 |
| M2016019458 | M2016019822 | 5 | 0 | NY: NY | CA | CO-HCFA | 46a |
| M2016019708 | M2017012316 | 5 | 0 | NY:MNb | HO | CO-HCFA | 53 |
| M2016019709 | M2016019822 | 5 | 0 | NY: NY | CA | CO-HCFA | 46 |
| M2016019715 | M2016019902 | 5 | 0 | NY: NY | HO | HO | 17a |
| M2017011680 | M2016019428 | 5 | 0 | MN:NYb | CA | CO-HCFA | 6 |
| M2016019477 | M2016019708 | 7 | 0 | NY: NY | HO | HO | 53 |
| M2017012311 | M2017014925 | 2 | 1 | MN:MN | CA | CA | 21 |
| M2016019458 | M2016019785 | 4 | 1 | NY: NY | CA | CA | 46a |
| M2016019468 | M2016019815 | 4 | 1 | NY: NY | LTCO | CO-HCFA | 1a |
| M2016019618 | M2016019780 | 4 | 1 | NY: NY | LTCO | CA | 1 |
| M2016019762 | M2016019818 | 4 | 1 | NY: NY | CA | HO | 1 |
| M2016019818 | M2016019849 | 4 | 1 | NY: NY | HO | CA | 1 |
| M2016019441 | M2016019468 | 5 | 1 | NY: NY | LTCO | LTCO | 1a |
| M2016019476 | M2016019809 | 5 | 1 | NY: NY | HO | HO | 53 |
| M2016019615 | M2016019785 | 5 | 1 | NY: NY | CO-HCFA | CA | 46a |
| M2016019785 | M2016019822 | 5 | 1 | NY: NY | CA | CO-HCFA | 46a |
| M2016019709 | M2016019785 | 6 | 1 | NY: NY | CA | CA | 46a |
| M2016019704 | M2016019714 | 7 | 1 | NY: NY | HO | HO | 8 |
| M2016019704 | M2016019743 | 7 | 1 | NY: NY | HO | CA | 8 |
| M2016019771 | M2017014466 | 7 | 1 | NY:MNb | LTCO | CO-HCFA | 41 |
| M2016019760 | M2016019867 | 8 | 1 | NY: NY | LTCO | LTCO | 11a |
Abbreviation: CA, community associated. CG, core genome; CO-HCFA, community onset–healthcare facility associated; HO, hospital onset; LTCO, long-term care facility onset; MLST, multilocus sequence type; MN, Minnesota; NY, New York; SNP, single-nucleotide polymorphism; WG, whole-genome.
a
Record review revealed that patients had contact with a common institution.
b
Interstate pairs.