TABLE 5.
Flagellar genes expressed in exponential and stationary growth phases of strain ST7 exposed to manganese.
| No. | Gene_ID | logFC | Up/down | Product | Path/hierarchy | Mean (Mn (II)) |
Mean (Control) |
| Exponential phase | |||||||
| 1 | RS07920 | 3.95 | up | flagellar motor switch protein FliM | Flagellar assembly path [ko02040]; Chemotaxis path [ko02030] | 8425.00 | 544.64 |
| 2 | RS07940 | 4.04 | up | flagellar type III secretion system pore protein FliP | Flagellar assembly path [ko02040] | 3484.05 | 211.39 |
| 3 | RS07950 | 3.94 | up | flagellar type III secretion system protein FliR | Flagellar assembly path [ko02040] | 3361.18 | 218.42 |
| 4 | RS07935 | 3.94 | up | flagella biosynthesis regulatory protein FliZ | Flagellar assembly path [ko02040] | 4412.17 | 287.39 |
| 5 | RS07905 | 3.56 | up | flagellar basal body rod protein FlgG | Flagellar assembly path [ko02040] | 5783.42 | 491.55 |
| 6 | RS07900 | 3.86 | up | flagellar hook assembly protein FlgD | Flagellar assembly path [ko02040] | 2812.57 | 193.89 |
| 7 | RS07915 | 3.74 | up | flagellar basal body-associated protein FliL | Motility hierarchy [BR:ko02035] | 2926.04 | 219.84 |
| 8 | RS07925 | 4.05 | up | flagellar motor switch phosphatase FliY | Flagellar assembly path [ko02040]; Chemotaxis path [ko02030] | 7159.87 | 433.39 |
| 9 | RS07880 | 3.39 | up | flagellar protein export ATPase FliI | Flagellar assembly path [ko02040] | 7395.22 | 707.71 |
| 10 | RS07965 | 3.51 | up | flagellar biosynthesis protein FlhF | Motility hierarchy [BR:ko02035] | 2818.12 | 246.68 |
| 11 | RS07885 | 3.30 | up | flagellar biosynthesis chaperone FliJ | Flagellar assembly path [ko02040] | 1791.89 | 181.42 |
| 12 | RS07850 | 2.90 | up | flagellar basal body rod protein FlgB | Flagellar assembly path [ko02040] | 2442.03 | 326.97 |
| 13 | RS07895 | 3.54 | up | flagellar hook-length control protein | Flagellar assembly path [ko02040] | 7398.99 | 637.55 |
| 14 | RS07860 | 3.09 | up | flagellar hook-basal body complex protein FliE | Flagellar assembly path [ko02040] | 1836.34 | 216.19 |
| 15 | RS07865 | 3.06 | up | flagellar basal body M-ring protein FliF | Flagellar assembly path [ko02040] | 12472.03 | 1493.58 |
| 16 | RS07875 | 3.28 | up | flagellar assembly protein FliH | Flagellar assembly path [ko02040] | 4168.67 | 428.55 |
| 17 | RS07960 | 2.62 | up | flagellar biosynthesis protein FlhA | Flagellar assembly path [ko02040] | 4093.97 | 667.79 |
| 18 | RS07855 | 2.93 | up | flagellar basal body rod protein FlgC | Flagellar assembly path [ko02040] | 2093.31 | 275.11 |
| 19 | RS07870 | 2.87 | up | flagellar motor switch protein FliG | Flagellar assembly path [ko02040]; Chemotaxis path [ko02030] | 6746.57 | 923.08 |
| 20 | RS17660 | 2.22 | up | flagellar hook-associated protein FlgL | Flagellar assembly path [ko02040] | 1314.91 | 283.02 |
| 21 | RS07945 | 3.01 | up | flagellar biosynthesis protein FliQ | Flagellar assembly path [ko02040 | 549.35 | 67.78 |
| 22 | RS17635 | 2.04 | up | flagellar hook-associated protein 2 | Flagellar assembly path [ko02040] | 569.16 | 138.34 |
| 23 | RS17630 | 1.96 | up | flagellar export chaperone FliS | Flagellar assembly path [ko02040] | 463.71 | 119.23 |
| 24 | RS17625 | 1.67 | up | flagellar protein FliT | Flagellar assembly path [ko02040] | 588.10 | 184.86 |
| 25 | RS06050 | 2.45 | up | flagellin Hag | Flagellar assembly path [ko02040] | 1500.93 | 273.93 |
| 26 | RS17665 | 1.74 | up | flagellar hook-associated protein FlgK | Flagellar assembly path [ko02040] | 2232.71 | 670.15 |
| 27 | RS17670 | 1.42 | up | flagellar protein FlgN | 549.07 | 204.85 | |
| 28 | RS06550 | 1.26 | up | flagellar motor protein MotB | Flagellar assembly path [ko02040]; Chemotaxis path [ko02030 | 742.19 | 309.18 |
| 29 | RS06555 | 1.64 | up | flagellar motor stator protein MotA | Flagellar assembly path [ko02040]; Chemotaxis path [ko02030] | 668.15 | 214.81 |
| 30 | RS18115 | 1.04 | up | flagellar hook-basal body protein | Flagellar assembly path [ko02040] | 2967.46 | 1442.44 |
| 31 | RS06055 | 1.00 | up | flagellin Hag | Flagellar assembly path [ko02040] | 227.78 | 114.28 |
| 32 | RS17675 | 1.15 | up | flagellar biosynthesis anti-sigma factor FlgM | Flagellar assembly path [ko02040] | 347.85 | 156.92 |
| 33 | RS17640 | 0.97 | no-diff | flagellar protein FlaG | Motility hierarchy [BR:ko02035] | 206.93 | 105.22 |
| Stationary growth phase | |||||||
| 1 | RS06555 | −3.74 | down | flagellar motor stator protein MotA | Flagellar assembly path [ko02040]; Chemotaxis path [ko02030] | 180.24 | 214.81 |
| 2 | RS17635 | −2.23 | down | flagellar hook-associated protein 2 | Flagellar assembly path [ko02040] | 79.06 | 138.34 |
| 3 | RS17630 | −2.09 | down | flagellar export chaperone FliS | Flagellar assembly path [ko02040] | 84.17 | 119.23 |
| 4 | RS06550 | −2.04 | down | flagellar motor protein MotB | Flagellar assembly path [ko02040]; Chemotaxis path [ko02030] | 277.78 | 309.18 |
| 5 | RS17625 | −1.76 | down | flagellar protein FliT | Flagellar assembly path [ko02040] | 65.14 | 184.86 |
| 6 | RS07935 | −1.74 | down | flagella biosynthesis regulatory protein FliZ | Flagellar assembly path [ko02040] | 1111.23 | 287.39 |
| 7 | RS07945 | −1.71 | down | flagellar biosynthesis protein FliQ | Flagellar assembly path [ko02040] | 83.72 | 67.78 |
| 8 | RS07925 | −1.57 | down | flagellar motor switch phosphatase FliY | Flagellar assembly path [ko02040]; Chemotaxis path [ko02030] | 1490.87 | 433.39 |
| 9 | RS07880 | −1.35 | down | flagellar protein export ATPase FliI | Flagellar assembly path [ko02040] | 1841.29 | 707.71 |
| 10 | RS05910 | 2.00 | up | flagellin Hag | Flagellar assembly path [ko02040] | 1290.59 | 277.32 |