Table 1.
Biological Sample | Approach | Pro vs. Contra |
---|---|---|
Tissue/cell | Carrier protein/enzyme purification | Pro: can give evidence for the existence and study of metabolite binding to the carrier/enzyme Contra: NATM |
Proteins, lipids | Reconstitution study | Pro: can show the capability of the isolated protein to work as a carrier when present in proteoliposomes/of the isolated enzyme to catalyze the reaction Contra: NATM |
Proteins | Sequencing | Pro: can give the possibility to investigate carrier protein/enzyme structure and metabolite binding sites Contra: NATM |
Cell/cell component | Cell fractionation | Pro: can show both carrier protein/enzyme localization and identification of the organelles involved in transport/catalysis Contra: NATM |
No biological system | Bioinformatic analysis | Pro: can give a first predictive insight into the localization and the role of a protein and in comparative genetics Contra: NATM |
Cell/cell component | Immunological analysis | Pro: can give evidence for the existence and the amount of a protein independently on its catalytic properties and localization Contra: NATM |
Cell/cell component | Confocal microscopy | Pro: can show localization of a protein in vitro Contra: NATM |
Cell/cell component | Magnetic resonance spectroscopy | Pro: allows to identify the levels of some metabolites in specific anatomical structures, Contra: NATM |
Cell/cell component | High-resolution mass spectroscopy | Pro: can show that enriched substrate can enter mitochondria by using 13C and 2-2H labels Contra: NATM |
Cell/cell component | Transmission electron microscopy | Pro: can show the mitochondrial localization Contra: NATM |
Cell/cell component | High-performance liquid chromatography (HPLC) | Pro: can give qualitative/quantitative analysis in biological sample Contra: NATM |
Abbreviation: NATM, nothing about transport and metabolism both in vitro and in vivo.