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. 2021 Dec 6;56(23):3192–3202.e8. doi: 10.1016/j.devcel.2021.10.022
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal anti-BROX Atlas Antibodies Cat# HPA031445; RRID: AB_10602697
Mouse monoclonal anti-HSP90α/β Santa Cruz Biotechnology Cat# sc-13119; RRID: AB_675659)
Rabbit polyclonal anti-CHMP7 Proteintech Cat# 16424-1-AP; RRID: AB_2079500
Mouse monoclonal anti-GFP (clones 7.1 and 13.1) Roche Cat# 11814460001; RRID: AB_390913
Rabbit polyclonal anti-HA Antibodies Online Cat# ABIN100176; RRID: AB_10779560
Rabbit polyclonal anti-UFD1L Proteintech Cat# 10615-1-AP; RRID: AB_2213944
Rabbit polyclonal anti-53BP1 Novus Biologicals Cat# NB100-304; RRID: AB_10003037
Rabbit monoclonal anti-Phospho-Histone H2A.X (Ser139) (20E3) Cell Signalling Cat##9718
Rabbit polyclonal anti-Lamin B1 Abcam Cat# ab16048; RRID: AB_443298
Secondary donkey anti-rabbit Alexa Fluor 555 ThermoFisher Scientific Cat# A-31572; RRID: AB_162543
Secondary goat anti-mouse (H+L DyLight™ 680 4X PEG Conjugate) Cell Signaling Technology Cat# 5470; RRID: AB_10696895
Secondary goat anti-mouse (H+L DyLight™ 800 4X PEG Conjugate) Cell Signaling Technology Cat# 5257; RRID: AB_10693543
Secondary goat anti-rabbit (H+L DyLight™ 800 4X PEG Conjugate) Cell Signaling Technology Cat# 5151; RRID: AB_10697505
Secondary goat anti-mouse (HRP-linked) Cell Signaling Technology Cat# 7076; RRID: AB_330924
Secondary goat anti-rabbit (HRP-linked) Cell Signaling Technology Cat# 7074; RRID: AB_2099233

Bacterial and virus strains

BL21 New England Biolabs C2530H

Chemicals, peptides, and recombinant proteins

Polyethylenimine Polysciences Cat# 23966-1
Polybrene Merck Millipore Cat# TR-1003-G
Puromycin Sigma-Aldrich Cat# P8833
G418 Thermo Fisher Scientific Cat# 10131035
Lipofectamine 3000 Thermo Fisher Scientific Cat# L3000008
RNAiMAX Thermo Fisher Scientific Cat# 13778150
Dharmafect-1 Horizon Discovery Cat# T-2001-02
Chlorophenol red-B-D-galactopyranoside (CPRG) Sigma-Aldrich Cat# 10884308001
Reversine Sigma-Aldrich Cat# R3904
SiR-actin Spirochrome Cat# CY-SC001
Hoechst 33258 Sigma-Aldrich Cat# 861405
Isopropyl β-d-1-thiogalactopyranoside (IPTG) Generon Cat# IB0168-25G
Glutathione sepharose 4B beads GE Healthcare Life Sciences Cat# 17075601
cOmplete protease inhibitor cocktail Sigma-Aldrich Cat# 000000011697498001
GFP-Trap M ChromoTek Cat#GTM-20
Eeyarestatin I Sigma-Aldrich Cat# E1286
Kifunensine Sigma-Aldrich Cat# K1140
Epoxy resin TAAB Cat# T028
Uranyless stain TAAB Cat# S474
Reynolds lead citrate TAAB Cat# L037
Prolong Diamond Antifade Mountant Thermo Fisher Scientific Cat# P36965
(S)-3’-amino Blebbistatin Cambridge Bioscience Ltd Cat# CAY24170
Y-27632 dihydrochloride Sigma-Aldrich Cat# Y0503

Critical commercial assays

ABI High-Capacity cDNA Reverse Transcription Kit Thermo Fisher Scientific Cat# 4368814

Experimental models: cell lines

HT1080 ATCC Cat# CRL-7951; RRID: CVCL_0317
HeLa ATCC Cat# CRM-CCL-2; RRID: CVCL_0030
HEK 293T ATCC Cat# CRL-3216; RRID: CVCL_0063
HT1080δLaminA/C De Vos laboratory (Antwerp University) N/A

Experimental models: organisms/strains

Y190 Yeast Strain Harper et al., 1993 N/A

Oligonucleotides

siNT: ON-TARGETplus Non-targeting Control siRNA Horizon Discovery (Dharmacon) D-001810-01-50
siBROX: Hs_C1orf58_3 FlexiTube siRNA Qiagen SI04234300
siCHMP7: 5’-GGGAGAAG
AUUGUGAAGUUdTdT-3’
Ventimiglia et al., 2018 Horizon Discovery (Dharmacon) Custom siRNA
siNesprin-2.1: 5’-GAGUGUCG
GAGGGAACUAAUU-3’
Jayo et al., 2016 Horizon Discovery (Dharmacon) Custom siRNA
siNesprin-2.2: 5’-GAAGAAAAG
GUGCAUGUUAUU-3’
Jayo et al., 2016 Horizon Discovery (Dharmacon) Custom siRNA
siUFD-1: 5’-GAGGCAGA
UUCGUCGCUUUdTdT-3’
Olmos et al., 2015 Horizon Discovery (Dharmacon) Custom siRNA

Recombinant DNA

pCMS28 mCherry-NLS Ventimiglia et al, 2018 N/A
pCMS28 mCherry-BAF This paper N/A
pNG72 GFP-L-BROXr This paper N/A
pNG72 GFP-L-BROXr C408S This paper N/A
pCMS28 mCherry-Emerin Ventimiglia et al, 2018 N/A
pNG72 CHMP4B-L-GFP Ventimiglia et al, 2018 N/A
YFP-LAP2β Carlton et al.,2012 N/A
pNG72 GFP-Emerin This paper N/A
pNG72 GFP-NLS Ventimiglia et al, 2018 N/A
pGEX Empty Agromayor et al. 2009 N/A
pGEX BROX WT This paper N/A
pGEX BROX L350A This paper N/A
pGEX BROX H204A This paper N/A
pCR3.1 GFP-CHMP4B Ventimiglia et al, 2018 N/A
pCR3.1 GFP-empty Ventimiglia et al, 2018 N/A
pCR3.1 hmN2GSR29-33 This paper N/A
pNG72 GFP-L-BROXr L350A This paper N/A
KT7 BROX WT This paper N/A
KT7 BROX E137A This paper N/A
KT7 BROX H144A This paper N/A
KT7 BROX R145A This paper N/A
KT7 BROX H204A This paper N/A
KT7 BROX L208A This paper N/A
KT7 BROX L208/212D This paper N/A
KT7 BROX L212D This paper N/A
KT7 BROX K322A This paper N/A
KT7 BROX Y348A This paper N/A
KT7 BROX Y348A This paper N/A
KT7 BROX L350A This paper N/A
KT7 BROX I354A This paper N/A
HB18 CHMP4B Martin-Serrano et al, 2003 N/A
HB18 CHMP5 C-terminal truncation This paper N/A
HB18 Nesprin-2 This paper N/A
pNG72 GFP-SOUBA This paper N/A
HA-Ubiquitin Agromayor and Martin-Serrano, 2006 N/A
pCR3.1 FLAG-BROX WT This paper N/A
pCR3.1 FLAG-BROX H204A This paper N/A
pCR3.1 GFP-hmN2G This paper N/A
pCR3.1 FLAG-BROX L350A This paper N/A

Software and algorithms

FIJI https://fiji.sc/ N/A
Prism 9 GraphPad N/A
Imaris 9 Bitplane N/A
AutoQuant X3 Media Cybernetics N/A
UCSF Chimera https://www.cgl.ucsf.edu/chimera/ N/A