REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit polyclonal anti-BROX | Atlas Antibodies | Cat# HPA031445; RRID: AB_10602697 |
Mouse monoclonal anti-HSP90α/β | Santa Cruz Biotechnology | Cat# sc-13119; RRID: AB_675659) |
Rabbit polyclonal anti-CHMP7 | Proteintech | Cat# 16424-1-AP; RRID: AB_2079500 |
Mouse monoclonal anti-GFP (clones 7.1 and 13.1) | Roche | Cat# 11814460001; RRID: AB_390913 |
Rabbit polyclonal anti-HA | Antibodies Online | Cat# ABIN100176; RRID: AB_10779560 |
Rabbit polyclonal anti-UFD1L | Proteintech | Cat# 10615-1-AP; RRID: AB_2213944 |
Rabbit polyclonal anti-53BP1 | Novus Biologicals | Cat# NB100-304; RRID: AB_10003037 |
Rabbit monoclonal anti-Phospho-Histone H2A.X (Ser139) (20E3) | Cell Signalling | Cat##9718 |
Rabbit polyclonal anti-Lamin B1 | Abcam | Cat# ab16048; RRID: AB_443298 |
Secondary donkey anti-rabbit Alexa Fluor 555 | ThermoFisher Scientific | Cat# A-31572; RRID: AB_162543 |
Secondary goat anti-mouse (H+L DyLight™ 680 4X PEG Conjugate) | Cell Signaling Technology | Cat# 5470; RRID: AB_10696895 |
Secondary goat anti-mouse (H+L DyLight™ 800 4X PEG Conjugate) | Cell Signaling Technology | Cat# 5257; RRID: AB_10693543 |
Secondary goat anti-rabbit (H+L DyLight™ 800 4X PEG Conjugate) | Cell Signaling Technology | Cat# 5151; RRID: AB_10697505 |
Secondary goat anti-mouse (HRP-linked) | Cell Signaling Technology | Cat# 7076; RRID: AB_330924 |
Secondary goat anti-rabbit (HRP-linked) | Cell Signaling Technology | Cat# 7074; RRID: AB_2099233 |
Bacterial and virus strains | ||
BL21 | New England Biolabs | C2530H |
Chemicals, peptides, and recombinant proteins | ||
Polyethylenimine | Polysciences | Cat# 23966-1 |
Polybrene | Merck Millipore | Cat# TR-1003-G |
Puromycin | Sigma-Aldrich | Cat# P8833 |
G418 | Thermo Fisher Scientific | Cat# 10131035 |
Lipofectamine 3000 | Thermo Fisher Scientific | Cat# L3000008 |
RNAiMAX | Thermo Fisher Scientific | Cat# 13778150 |
Dharmafect-1 | Horizon Discovery | Cat# T-2001-02 |
Chlorophenol red-B-D-galactopyranoside (CPRG) | Sigma-Aldrich | Cat# 10884308001 |
Reversine | Sigma-Aldrich | Cat# R3904 |
SiR-actin | Spirochrome | Cat# CY-SC001 |
Hoechst 33258 | Sigma-Aldrich | Cat# 861405 |
Isopropyl β-d-1-thiogalactopyranoside (IPTG) | Generon | Cat# IB0168-25G |
Glutathione sepharose 4B beads | GE Healthcare Life Sciences | Cat# 17075601 |
cOmplete protease inhibitor cocktail | Sigma-Aldrich | Cat# 000000011697498001 |
GFP-Trap M | ChromoTek | Cat#GTM-20 |
Eeyarestatin I | Sigma-Aldrich | Cat# E1286 |
Kifunensine | Sigma-Aldrich | Cat# K1140 |
Epoxy resin | TAAB | Cat# T028 |
Uranyless stain | TAAB | Cat# S474 |
Reynolds lead citrate | TAAB | Cat# L037 |
Prolong Diamond Antifade Mountant | Thermo Fisher Scientific | Cat# P36965 |
(S)-3’-amino Blebbistatin | Cambridge Bioscience Ltd | Cat# CAY24170 |
Y-27632 dihydrochloride | Sigma-Aldrich | Cat# Y0503 |
Critical commercial assays | ||
ABI High-Capacity cDNA Reverse Transcription Kit | Thermo Fisher Scientific | Cat# 4368814 |
Experimental models: cell lines | ||
HT1080 | ATCC | Cat# CRL-7951; RRID: CVCL_0317 |
HeLa | ATCC | Cat# CRM-CCL-2; RRID: CVCL_0030 |
HEK 293T | ATCC | Cat# CRL-3216; RRID: CVCL_0063 |
HT1080δLaminA/C | De Vos laboratory (Antwerp University) | N/A |
Experimental models: organisms/strains | ||
Y190 Yeast Strain | Harper et al., 1993 | N/A |
Oligonucleotides | ||
siNT: ON-TARGETplus Non-targeting Control siRNA | Horizon Discovery (Dharmacon) | D-001810-01-50 |
siBROX: Hs_C1orf58_3 FlexiTube siRNA | Qiagen | SI04234300 |
siCHMP7: 5’-GGGAGAAG AUUGUGAAGUUdTdT-3’ |
Ventimiglia et al., 2018 | Horizon Discovery (Dharmacon) Custom siRNA |
siNesprin-2.1: 5’-GAGUGUCG GAGGGAACUAAUU-3’ |
Jayo et al., 2016 | Horizon Discovery (Dharmacon) Custom siRNA |
siNesprin-2.2: 5’-GAAGAAAAG GUGCAUGUUAUU-3’ |
Jayo et al., 2016 | Horizon Discovery (Dharmacon) Custom siRNA |
siUFD-1: 5’-GAGGCAGA UUCGUCGCUUUdTdT-3’ |
Olmos et al., 2015 | Horizon Discovery (Dharmacon) Custom siRNA |
Recombinant DNA | ||
pCMS28 mCherry-NLS | Ventimiglia et al, 2018 | N/A |
pCMS28 mCherry-BAF | This paper | N/A |
pNG72 GFP-L-BROXr | This paper | N/A |
pNG72 GFP-L-BROXr C408S | This paper | N/A |
pCMS28 mCherry-Emerin | Ventimiglia et al, 2018 | N/A |
pNG72 CHMP4B-L-GFP | Ventimiglia et al, 2018 | N/A |
YFP-LAP2β | Carlton et al.,2012 | N/A |
pNG72 GFP-Emerin | This paper | N/A |
pNG72 GFP-NLS | Ventimiglia et al, 2018 | N/A |
pGEX Empty | Agromayor et al. 2009 | N/A |
pGEX BROX WT | This paper | N/A |
pGEX BROX L350A | This paper | N/A |
pGEX BROX H204A | This paper | N/A |
pCR3.1 GFP-CHMP4B | Ventimiglia et al, 2018 | N/A |
pCR3.1 GFP-empty | Ventimiglia et al, 2018 | N/A |
pCR3.1 hmN2GSR29-33 | This paper | N/A |
pNG72 GFP-L-BROXr L350A | This paper | N/A |
KT7 BROX WT | This paper | N/A |
KT7 BROX E137A | This paper | N/A |
KT7 BROX H144A | This paper | N/A |
KT7 BROX R145A | This paper | N/A |
KT7 BROX H204A | This paper | N/A |
KT7 BROX L208A | This paper | N/A |
KT7 BROX L208/212D | This paper | N/A |
KT7 BROX L212D | This paper | N/A |
KT7 BROX K322A | This paper | N/A |
KT7 BROX Y348A | This paper | N/A |
KT7 BROX Y348A | This paper | N/A |
KT7 BROX L350A | This paper | N/A |
KT7 BROX I354A | This paper | N/A |
HB18 CHMP4B | Martin-Serrano et al, 2003 | N/A |
HB18 CHMP5 C-terminal truncation | This paper | N/A |
HB18 Nesprin-2 | This paper | N/A |
pNG72 GFP-SOUBA | This paper | N/A |
HA-Ubiquitin | Agromayor and Martin-Serrano, 2006 | N/A |
pCR3.1 FLAG-BROX WT | This paper | N/A |
pCR3.1 FLAG-BROX H204A | This paper | N/A |
pCR3.1 GFP-hmN2G | This paper | N/A |
pCR3.1 FLAG-BROX L350A | This paper | N/A |
Software and algorithms | ||
FIJI | https://fiji.sc/ | N/A |
Prism 9 | GraphPad | N/A |
Imaris 9 | Bitplane | N/A |
AutoQuant X3 | Media Cybernetics | N/A |
UCSF Chimera | https://www.cgl.ucsf.edu/chimera/ | N/A |