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. 2000 May;38(5):1763–1766. doi: 10.1128/jcm.38.5.1763-1766.2000

TABLE 1.

Primers and conditions for PCR of transmissibility marker genes of B. cepacia

Target Primer (reference) Sequence PCR conditions Amplicon size (bp)
cblA CBL1 (10) 5′ CCAAAGGACTAACCCA 3′ 96°C for 5 min, 1 cycle 664
CBL2 5′ AGCCGATGTCCATCACA 3′ 96°C for 15 s, 58°C for 30 s, 72°C for 90 s, 25 cycles; 70°C for 5 min, 1 cycle
IS hybrid 402A (11) 5′ CAACCGAGACTGAGGAGATG 3′ 96°C for 5 min, 1 cycle 592
1356B 5′ TCCGGCGACACCTCGATGCC 3′ 96°C for 15 s, 63°C for 30 s, 72°C for 90 s, 25 cycles; 70°C for 5 min, 1 cycle
Epidemic marker BCESM1 (13) 5′ CCACGGACGTGACTAACA 3′ 96°C for 5 min, 1 cycle 1,400
BCESM2 5′ CGTCCATCCGAACACGAT 3′ 96°C for 15 s, 63°C for 30 s, 72°C for 90 s, 25 cycles; 70°C for 5 min, 1 cycle
RAPD P272 (12) 5′ AGCGGGCCAA 3′ 95°C for 5 min, 1 cycle; 95°C for 1 min, 36°C for 5 min, 72°C for 2 min, 45 cycles