TABLE 2.
Summary of reads quality control analysis.
| SampleName | TotalReads_Before | Totalbase_Before | Totalbase_After | BaseFilter% (%) |
|---|---|---|---|---|
| Patient1-IP | 42,055,591 | 6,308,338,650bp | 6,125,183,549bp | 97.10 |
| Patient2-IP | 51,866,184 | 7,779,927,600bp | 7,628,452,162bp | 98.10 |
| Patient3-IP | 45,606,827 | 6,841,024,050bp | 6,635,546,539bp | 97.00 |
| Control1-IP | 43,306,222 | 6,495,933,300bp | 6,292,021,712bp | 96.90 |
| Control2-IP | 44,868,751 | 6,730,312,650bp | 6,453,732,389bp | 95.90 |
| Control3-IP | 44,911,148 | 6,736,672,200bp | 6,604,071,380bp | 98.00 |
| Patient1-Input | 44,180,024 | 6,627,003,600bp | 6,300,789,080bp | 95.10 |
| Patient2-Input | 57,064,051 | 8,559,607,650bp | 8,145,517,911bp | 95.20 |
| Patient3-Input | 39,713,253 | 5,956,987,950bp | 5,475,127,085bp | 91.90 |
| Control1-Input | 43,211,484 | 6,481,722,600bp | 6,080,268,117bp | 93.80 |
| Control2-Input | 43,081,347 | 6,462,202,050bp | 6,047,838,238bp | 93.60 |
| Control3-Input | 40,372,667 | 6,055,900,050bp | 5,664,859,110bp | 93.50 |