Table 3.
Numbers, total length, and percentages of the Aet v5.0 genome sequence represented by classes of transposable elements
| Class | Elements (no) | Sequence length (bp) | Genome length (%) |
|---|---|---|---|
| Class I | |||
| LTR/Gypsy | 853,285 | 1,333,833,165 | 33.17 |
| LTR/Copia | 383,555 | 644,052,368 | 16.02 |
| LTR/Unknown | 456,559 | 611,381,110 | 15.20 |
| Non-LTR/LINE | 192,648 | 80,369,034 | 2.00 |
| Non-LTR/SINE | 19,503 | 3,344,990 | 0.08 |
| Class II | |||
| CACTA | 201,749 | 203,285,995 | 5.05 |
| Mutator | 29,706 | 10,397,597 | 0.26 |
| PIF-Harbinger | 77,072 | 22,128,071 | 0.55 |
| Tc1-Mariner | 166,095 | 48,513,995 | 1.2 |
| hAT | 17,127 | 3,870,055 | 0.09 |
| Helitron | 219,796 | 113,044,338 | 2.81 |
| MITE/Stowaway | 1,139 | 174,827 | 0.00 |
| MITE/Tourist | 453 | 80,546 | 0.00 |
| DNA/unknown | 1,245 | 296,555 | 0.01 |
| Unspecified | 393,632 | 410,074,883 | 10.20 |
| Total interspersed | 3,013,564 | 3,484,847,529 | 86.65 |
| Low complexity | 20,328 | 1,104,950 | 0.03 |
| Simple repeat | 173,933 | 7,922,189 | 0.20 |
| Total | 3,207,825 | 3,493,874,668 | 86.88 |